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crlmm
•
reset
0
votes
0
replies
182
views
crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray
cdf
crlmm
3 months ago
mayra.haedo
• 0
0
votes
1
reply
1.1k
views
How to make OPLS-DA variable importance plot
crlmm
ropls
Metabolomics
updated 12 months ago by
James W. MacDonald
66k • written 12 months ago by
Charlotte
• 0
0
votes
1
reply
723
views
affy package and SNP arrays
crlmm
hapmapsnp6
genomewidesnp6Crlmm
affy
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 12 months ago by
Vincent J. Carey, Jr.
6.7k
11
votes
23
replies
2.7k
views
crlmm support for Illumina arrays with no annotation package?
crlmm
QCarray
annotation
updated 4.5 years ago by
milo.yanez20
• 0 • written 4.7 years ago by
deanpett
▴ 30
0
votes
0
replies
579
views
genotype from oncoscan
oncoscan
genotype
crlmm
5.1 years ago
sanju
• 0
1
vote
0
replies
982
views
crlmm package: issue with Infinium CytoSNP-850K v1.2 BeadChip platform
crlmm
updated 5.3 years ago by
James W. MacDonald
66k • written 5.3 years ago by
edoardo.missiaglia
▴ 10
0
votes
0
replies
705
views
CRLMM for new arrays (Xgen)
crlmm
array
xgen
5.4 years ago
smurali
• 0
0
votes
3
replies
1.3k
views
cram for new chips
beadarray
illumina beadarray
crlmm
updated 6.0 years ago by
Valerie Obenchain
★ 6.8k • written 6.0 years ago by
lack.justin
• 0
2
votes
4
replies
1.6k
views
Crlmm HumanOmniExpress-24v1 Annotation not available
crlmm
updated 6.0 years ago by
lack.justin
• 0 • written 8.9 years ago by
andrew.j.skelton73
▴ 370
1
vote
1
reply
1.5k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm
gsa
microarray
illumina
written 6.2 years ago by
shaun
• 0
1
vote
1
reply
1.5k
views
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
crlmm
genotype.Illumina
ff
updated 6.4 years ago by
Katsura
• 0 • written 7.9 years ago by
komal.rathi
▴ 120
0
votes
6
replies
2.1k
views
CRLMM: Error in quantile.default(M, c(1, 5)/6, names = FALSE)
crlmm
updated 7.1 years ago by
Matthew Ritchie
▴ 1000 • written 7.9 years ago by
komal.rathi
▴ 120
0
votes
0
replies
895
views
crlmm for new chip?
crlmm
7.3 years ago
Scottt Hazelhurst
• 0
0
votes
5
replies
1.8k
views
CRLMM: Which array type work with which annotation package
crlmm
updated 7.7 years ago by
Matthew Ritchie
▴ 1000 • written 7.7 years ago by
komal.rathi
▴ 120
0
votes
1
reply
1.2k
views
Bug?: crlmm and cdfName not valid
software error
crlmm
updated 7.7 years ago by
Matthew Ritchie
▴ 1000 • written 7.7 years ago by
mcgaugheyd
• 0
0
votes
0
replies
1.3k
views
crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv
cnvtools
crlmm
7.9 years ago
enriquev
• 0
1
vote
1
reply
1.5k
views
CRLMM: the leading minor of order 1 is not positive definite
crlmm
7.9 years ago
komal.rathi
▴ 120
0
votes
0
replies
1.2k
views
Illumina Genotyping in parallel raise an error
crlmm
snp
illumina
8.0 years ago
nadne
▴ 10
0
votes
0
replies
1.1k
views
CRLMM: missing mitochondrial SNPs
crlmm
genotype
mitochondria
8.0 years ago
nadne
▴ 10
1
vote
0
replies
1.5k
views
Recall genotypes from Illumina idat files using crlmm package
crlmm
genotype
8.4 years ago
nadne
▴ 10
0
votes
0
replies
1.3k
views
genotype function from crlmm package creates next error "Error in quantile.default(M, c(1, 5)/6, names = FALSE) : missing values and NaN's not allowe…
software error
crlmm
genotype function
8.4 years ago
IOM
▴ 20
1
vote
1
reply
1.7k
views
crlmm Illumina SNP array genotyping
crlmm
oligo
8.4 years ago
vladhkim
▴ 10
1
vote
6
replies
2.1k
views
Copy number analysis from Illumina 550K chip
illumina
copynumber
crlmm
8.7 years ago
stuti.agrawal
• 0
1
vote
1
reply
1.3k
views
Error genotyping with CRLMM
crlmm
copynumber
illumina
updated 8.7 years ago by
andrew.j.skelton73
▴ 370 • written 8.7 years ago by
stuti.agrawal
• 0
1
vote
4
replies
1.5k
views
crlmm crossprod error, and missing files in annotation
crlmm
updated 8.9 years ago by
Matthew Ritchie
▴ 1000 • written 8.9 years ago by
andrew.j.skelton73
▴ 370
0
votes
1
reply
1.4k
views
"genomdat must be numeric" error form DNACopy package
software error
dnacopy
crlmm
updated 9.0 years ago by
James W. MacDonald
66k • written 9.0 years ago by
perdomos
• 0
0
votes
1
reply
1.1k
views
Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
9.0 years ago
Shi, Tao
▴ 720
0
votes
2
replies
2.1k
views
reading .idat files using genotype.Illumina in crlmm
crlmm
idat
updated 9.0 years ago by
Matthew Ritchie
▴ 1000 • written 9.0 years ago by
Shi, Tao
▴ 720
0
votes
4
replies
1.4k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 9.1 years ago by
rscharpf
• 0 • written 9.1 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.0k
views
crlmm: RFC - new feature to work on subsets of CEL files
crlmm
9.2 years ago
Karl Forner
▴ 70
0
votes
0
replies
970
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
9.3 years ago
kforner
• 0
0
votes
1
reply
1.4k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
9.3 years ago
kforner
• 0
1
vote
5
replies
1.9k
views
CRLMM on Illumina Human1Mv1_C chips
crlmm
illumina
beadarraysnp
updated 9.3 years ago by
Matthew Ritchie
▴ 1000 • written 9.3 years ago by
René
▴ 30
0
votes
0
replies
1.4k
views
how to build a new crlmm CDF annotation package?
crlmm
annotation
9.5 years ago
Aaron Mackey
▴ 200
0
votes
1
reply
1.5k
views
CRLMM for Affymetrix Axiom Genome-Wide Population-Optimized Human Arrays
crlmm
axiom
updated 9.6 years ago by
Benilton Carvalho
★ 4.3k • written 9.6 years ago by
simpsoncl
• 0
0
votes
0
replies
1.2k
views
crlmm of other software for oncoscan
Cancer
crlmm
Cancer
crlmm
10.1 years ago
Richard Friedman
▴ 80
0
votes
6
replies
2.6k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.1 years ago by
Matthew Ritchie
▴ 1000 • written 10.1 years ago by
Abhishek Pratap
▴ 160
0
votes
0
replies
1.3k
views
crlmm problem
SNP
convert
beadarray
crlmm
SNP
convert
beadarray
crlmm
10.3 years ago
Matthias Arnold
▴ 10
0
votes
1
reply
2.2k
views
crlmm : copy number and genotyping of Illumina data
SNP
Annotation
Normalization
crlmm
copynumber
SNP
Annotation
Normalization
crlmm
updated 10.4 years ago by
Matthew Ritchie
▴ 1000 • written 10.4 years ago by
Abhishek Pratap
▴ 160
0
votes
2
replies
1.5k
views
crlmm problem
SNP
beadarray
crlmm
SNP
beadarray
crlmm
10.4 years ago
Aaerp
▴ 40
0
votes
0
replies
967
views
getting genotypes with oligo package
SNP
oligo
crlmm
SNP
oligo
crlmm
11.0 years ago
Guest User
★ 13k
0
votes
1
reply
829
views
how to use the confs value in crlmm
crlmm
crlmm
updated 11.3 years ago by
Benilton Carvalho
★ 4.3k • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Crlmm package
SNP
Annotation
Normalization
crlmm
SNP
Annotation
Normalization
crlmm
updated 11.3 years ago by
Matthew Ritchie
▴ 1000 • written 11.3 years ago by
khadeeja ismail
▴ 400
0
votes
0
replies
1.1k
views
NAs in snp.rhs.tests
SNP
illuminaHumanv1
affy
crlmm
SNP
illuminaHumanv1
affy
crlmm
11.7 years ago
maria traka IFR
▴ 30
0
votes
3
replies
4.7k
views
Translating AB/BB/AA into a SNP with Illumina data
SNP
crlmm
SNP
crlmm
updated 12.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 12.0 years ago by
Lavinia Gordon
▴ 480
0
votes
1
reply
1.3k
views
crlmm Illumina cdfName "human1mv1c" not valid
crlmm
crlmm
updated 12.0 years ago by
Rob Scharpf
▴ 250 • written 12.0 years ago by
Richard Thompson
▴ 10
0
votes
1
reply
1.2k
views
boxplot/histograms on preprocessed SNP affy data with crlmm package
SNP
oligo
crlmm
SNP
oligo
crlmm
updated 12.0 years ago by
Benilton Carvalho
★ 4.3k • written 12.0 years ago by
Javier Pérez Florido
▴ 840
0
votes
1
reply
1.6k
views
Copy Number Analysis across multiple SNP array plaforms
SNP
Cancer
crlmm
ffpe
SNP
Cancer
crlmm
ffpe
updated 12.2 years ago by
Djork Clevert
▴ 210 • written 12.2 years ago by
Ed Schwalbe
▴ 20
0
votes
0
replies
954
views
Normalized values in oligo::crlmm and oligo::snprma don't match?
SNP
Normalization
oligo
crlmm
SNP
Normalization
oligo
crlmm
12.2 years ago
Denise Mak
▴ 10
0
votes
1
reply
1.1k
views
ilumina CanineHD
cdf
crlmm
cdf
crlmm
updated 12.5 years ago by
Matthew Ritchie
▴ 1000 • written 12.5 years ago by
Vidhya Gnanasekaran
▴ 10
50 results • Page
1 of 1
Recent ...
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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