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correlation
•
reset
1
vote
2
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499
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QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 11 months ago by
Researcher
▴ 10
0
votes
1
reply
1.2k
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 16 months ago by
ATpoint
★ 4.8k • written 7.0 years ago by
saad_k6
• 0
0
votes
2
replies
2.1k
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 11 months ago by
mariakenneth147
• 0 • written 2.4 years ago by
pharamac
• 0
0
votes
1
reply
1.4k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
updated 16 months ago by
Vanatta
• 0 • written 3.4 years ago by
mairah.khan
• 0
0
votes
1
reply
1.3k
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
keshav.prasad.gubbi
• 0
1
vote
1
reply
1.4k
views
spearman correlation
correlation
sperarman
updated 3.6 years ago by
ATpoint
★ 4.8k • written 3.6 years ago by
info@shi
• 0
15
votes
17
replies
28k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 4.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.6 years ago by
jol.espinoz
▴ 40
5
votes
1
reply
2.1k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
tobias-messmer
▴ 20
0
votes
2
replies
1.2k
views
Correlation plot how to improve?
plot
correlation
5.5 years ago
annkolman78
• 0
4
votes
7
replies
1.7k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2
correlation
6.4 years ago
Cornwell, Adam
▴ 110
0
votes
3
replies
1.5k
views
Coverage profile comparison
Targeted sequencing
correlation
coverage
euclid
clustering
6.5 years ago
faramer86
• 0
0
votes
1
reply
1.3k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
6.8 years ago
adriana.gallego.02
▴ 20
0
votes
1
reply
1.4k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.1 years ago by
Peter Langfelder
★ 3.0k • written 7.1 years ago by
hkarakurt
▴ 20
2
votes
1
reply
1.0k
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 7.2 years ago by
chris86
▴ 420 • written 7.2 years ago by
Arman Shahrisa
▴ 20
0
votes
6
replies
1.9k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 7.9 years ago by
vulegom
• 0 • written 8.2 years ago by
DataFanatic
▴ 10
1
vote
2
replies
2.4k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind
heatmap
correlation
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
a.bahraini88
• 0
7
votes
3
replies
4.0k
views
plotting correlation between samples
correlation
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
teresati
▴ 10
4
votes
9
replies
4.0k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 8.2 years ago by
Peter Langfelder
★ 3.0k • written 8.2 years ago by
jol.espinoz
▴ 40
4
votes
4
replies
1.8k
views
Correlation analysis taking into account multiple correlations
edger
rna-seq
correlation
updated 8.6 years ago by
Andrew_McDavid
▴ 280 • written 8.6 years ago by
jhj89
▴ 10
2
votes
7
replies
5.3k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.2 years ago by
Peter Langfelder
★ 3.0k • written 9.2 years ago by
shalinisonar13
▴ 20
2
votes
4
replies
2.7k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 9.7 years ago by
Ryan C. Thompson
★ 7.9k • written 9.7 years ago by
matt.arno
• 0
3
votes
3
replies
1.7k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 10.0 years ago by
Sean Davis
21k • written 10.0 years ago by
Johannes Rainer
★ 2.1k
22 results • Page
1 of 1
Recent ...
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Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2
by
cold.wolverine.arku
• 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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A: Understanding contrasts limma
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
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