Showing : correlation • reset
1
vote
2
replies
377
views
QSEA- Extraction of Normalized methylation across the samples
qsea ngsReports correlation
written 7 months ago by ▴ 10
0
votes
1
reply
1.1k
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 12 months ago by ★ 4.6k • written 6.7 years ago by • 0
0
votes
2
replies
1.6k
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 7 months ago by • 0 • written 2.1 years ago by • 0
0
votes
1
reply
1.3k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 12 months ago by • 0 • written 3.0 years ago by • 0
0
votes
1
reply
1.1k
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 2.4 years ago by 43k • written 2.4 years ago by • 0
1
vote
1
reply
1.3k
views
spearman correlation
correlation sperarman
updated 3.2 years ago by ★ 4.6k • written 3.2 years ago by • 0
15
votes
17
replies
26k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 4.0 years ago by ▴ 760 • written 8.3 years ago by ▴ 40
5
votes
1
reply
1.9k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.7 years ago by ★ 28k • written 4.7 years ago by ▴ 20
0
votes
2
replies
1.1k
views
Correlation plot how to improve?
plot correlation
5.2 years ago annkolman78 • 0
4
votes
7
replies
1.6k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
6.1 years ago Cornwell, Adam ▴ 110
0
votes
3
replies
1.4k
views
Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
6.2 years ago faramer86 • 0
0
votes
1
reply
1.2k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
6.5 years ago adriana.gallego.02 ▴ 20
0
votes
1
reply
1.3k
views
Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 20
2
votes
1
reply
983
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by ▴ 20
0
votes
6
replies
1.7k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.6 years ago by • 0 • written 7.9 years ago by ▴ 10
1
vote
2
replies
2.3k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by • 0
7
votes
3
replies
3.6k
views
plotting correlation between samples
correlation
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 10
4
votes
9
replies
3.8k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 7.9 years ago by ★ 3.0k • written 7.9 years ago by ▴ 40
4
votes
4
replies
1.6k
views
Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 8.3 years ago by ▴ 270 • written 8.3 years ago by ▴ 10
2
votes
7
replies
5.1k
views
How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 8.8 years ago by ★ 3.0k • written 8.9 years ago by ▴ 20
2
votes
4
replies
2.6k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by • 0
3
votes
3
replies
1.6k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.7 years ago by 21k • written 9.7 years ago by ★ 2.1k
22 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
EMBL Heidelberg, 12 minutes ago
United States, 1 hour ago
France, 1 hour ago
United Kingdom, 2 hours ago
WEHI, Melbourne, Australia, 5 hours ago
Traffic: 494 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6