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correlation
•
reset
1
vote
2
replies
398
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 8 months ago by
Researcher
▴ 10
0
votes
1
reply
1.1k
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 13 months ago by
ATpoint
★ 4.6k • written 6.8 years ago by
saad_k6
• 0
0
votes
2
replies
1.7k
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 8 months ago by
mariakenneth147
• 0 • written 2.2 years ago by
pharamac
• 0
0
votes
1
reply
1.3k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
updated 13 months ago by
Vanatta
• 0 • written 3.1 years ago by
mairah.khan
• 0
0
votes
1
reply
1.2k
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
updated 2.4 years ago by
Michael Love
43k • written 2.4 years ago by
keshav.prasad.gubbi
• 0
1
vote
1
reply
1.3k
views
spearman correlation
correlation
sperarman
updated 3.3 years ago by
ATpoint
★ 4.6k • written 3.3 years ago by
info@shi
• 0
15
votes
17
replies
27k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 4.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.4 years ago by
jol.espinoz
▴ 40
5
votes
1
reply
2.0k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
tobias-messmer
▴ 20
0
votes
2
replies
1.1k
views
Correlation plot how to improve?
plot
correlation
5.3 years ago
annkolman78
• 0
4
votes
7
replies
1.6k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2
correlation
6.2 years ago
Cornwell, Adam
▴ 110
0
votes
3
replies
1.4k
views
Coverage profile comparison
Targeted sequencing
correlation
coverage
euclid
clustering
6.3 years ago
faramer86
• 0
0
votes
1
reply
1.2k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
6.6 years ago
adriana.gallego.02
▴ 20
0
votes
1
reply
1.3k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 6.9 years ago by
Peter Langfelder
★ 3.0k • written 6.9 years ago by
hkarakurt
▴ 20
2
votes
1
reply
995
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.9 years ago by
chris86
▴ 420 • written 6.9 years ago by
Arman Shahrisa
▴ 20
0
votes
6
replies
1.8k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 7.7 years ago by
vulegom
• 0 • written 8.0 years ago by
DataFanatic
▴ 10
1
vote
2
replies
2.3k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind
heatmap
correlation
updated 7.8 years ago by
Rory Stark
★ 5.2k • written 7.8 years ago by
a.bahraini88
• 0
7
votes
3
replies
3.7k
views
plotting correlation between samples
correlation
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
teresati
▴ 10
4
votes
9
replies
3.8k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 8.0 years ago by
Peter Langfelder
★ 3.0k • written 8.0 years ago by
jol.espinoz
▴ 40
4
votes
4
replies
1.6k
views
Correlation analysis taking into account multiple correlations
edger
rna-seq
correlation
updated 8.4 years ago by
Andrew_McDavid
▴ 270 • written 8.4 years ago by
jhj89
▴ 10
2
votes
7
replies
5.1k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 8.9 years ago by
Peter Langfelder
★ 3.0k • written 8.9 years ago by
shalinisonar13
▴ 20
2
votes
4
replies
2.6k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 9.4 years ago by
Ryan C. Thompson
★ 7.9k • written 9.4 years ago by
matt.arno
• 0
3
votes
3
replies
1.6k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.8 years ago by
Sean Davis
21k • written 9.8 years ago by
Johannes Rainer
★ 2.1k
22 results • Page
1 of 1
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Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…
Answer: SingleCellExperiment convenience function for metadata+expression?
by
Peter Hickey
▴ 740
Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
QN
▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs
by
ATpoint
★ 4.6k
"Joseph" is a spam bot...
Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
by
ATpoint
★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
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