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Correlation
•
reset
0
votes
0
replies
81
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
18 days ago
Researcher
• 0
0
votes
1
reply
927
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 5 months ago by
ATpoint
★ 4.2k • written 6.1 years ago by
saad_k6
• 0
0
votes
2
replies
989
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 16 days ago by
mariakenneth147
• 0 • written 18 months ago by
pharamac
• 0
0
votes
1
reply
1.0k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
updated 5 months ago by
Vanatta
• 0 • written 2.5 years ago by
mairah.khan
• 0
0
votes
1
reply
860
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
updated 21 months ago by
Michael Love
42k • written 21 months ago by
keshav.prasad.gubbi
• 0
1
vote
1
reply
1.0k
views
spearman correlation
correlation
sperarman
updated 2.7 years ago by
ATpoint
★ 4.2k • written 2.7 years ago by
info@shi
• 0
15
votes
17
replies
23k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 3.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 7.7 years ago by
jol.espinoz
▴ 40
4
votes
1
reply
1.6k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
tobias-messmer
▴ 10
0
votes
2
replies
932
views
Correlation plot how to improve?
plot
correlation
4.6 years ago
annkolman78
• 0
4
votes
7
replies
1.3k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2
correlation
5.5 years ago
Cornwell, Adam
▴ 110
0
votes
3
replies
1.2k
views
Coverage profile comparison
Targeted sequencing
correlation
coverage
euclid
clustering
5.6 years ago
faramer86
• 0
0
votes
1
reply
1.0k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
5.9 years ago
adriana.gallego.02
▴ 20
0
votes
1
reply
1.1k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 6.2 years ago by
Peter Langfelder
★ 3.0k • written 6.2 years ago by
hkarakurt
▴ 20
2
votes
1
reply
859
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 6.3 years ago by
chris86
▴ 420 • written 6.3 years ago by
Arman Shahrisa
▴ 20
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 7.0 years ago by
vulegom
• 0 • written 7.3 years ago by
DataFanatic
▴ 10
1
vote
2
replies
2.0k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind
heatmap
correlation
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
a.bahraini88
• 0
7
votes
3
replies
3.2k
views
plotting correlation between samples
correlation
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
teresati
▴ 10
4
votes
9
replies
3.4k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
jol.espinoz
▴ 40
4
votes
4
replies
1.4k
views
Correlation analysis taking into account multiple correlations
edger
rna-seq
correlation
updated 7.7 years ago by
Andrew_McDavid
▴ 270 • written 7.7 years ago by
jhj89
▴ 10
2
votes
7
replies
4.7k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 8.3 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
shalinisonar13
▴ 20
2
votes
4
replies
2.3k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 8.8 years ago by
Ryan C. Thompson
★ 7.9k • written 8.8 years ago by
matt.arno
• 0
3
votes
3
replies
1.5k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.1 years ago by
Sean Davis
21k • written 9.1 years ago by
Johannes Rainer
★ 2.0k
22 results • Page
1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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