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cooks
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Which samples to remove from analysis based on Cook's distance outliers plot
DESeq2
cooks
outliers
updated 15 months ago by
ATpoint
★ 4.2k • written 15 months ago by
Michael
• 0
7
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8
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2.1k
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Cook's Distance Outliers: None reported in results table and "cooksCutoff" modification has no effect
deseq2
outliers
cooks
cooks distance
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
donnenfieldjonah
• 0
2 results • Page
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Comment: EnhancedVolcano results in an empty plot
by
Patadù
▴ 10
Hi James, I do not know if it might be of interest for you, but in the end I could plot the Volcano plot. I did have to use the `lfcShrink(…
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
by
Yang Liao
▴ 400
Both `v1.5.0` and `v1.6.4` versions are very old. I suggest upgrading to `v2.0.6` (the latest version). There was a change regarding the `…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
Sounds good. Thanks again!
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
James W. MacDonald
66k
Ah, ok. Doesn't really matter though. Try using `UniProt.ws`.
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
I believe my `NCBI.sqlite` database is located in the same directory, but for some reason it seems to be empty. Even in the File explorer i…
Votes
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
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