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combineArrays
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CombineArrays for EPIC and EPIC V2
EPICV1
Methylation
combineArrays
minifi
EPICv2manifest
8 weeks ago • updated 28 days ago
Kim
• 0
3
votes
6
replies
1.7k
views
Minfi can't combineArrays
RGset
combinearrays
450k
minfi
updated 2.8 years ago by
James W. MacDonald
66k • written 2.8 years ago by
Sophie Marion de Proce
• 0
2 results • Page
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Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Answer: makeExampleDESeqDataSet using pilot data
by
Michael Love
42k
`dispMeanRel` would be `dispersionFunction(dds)` from a pilot dataset. It's the relationship between dispersion and mean. `betaSD` is no…
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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