Bioconductor Color

Showing : color • reset

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864

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plot color Gviz utr

3.8 years ago ginlucks • 0

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1.9k

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DiffBind plot color

updated 5.0 years ago by Rory Stark ★ 5.2k • written 5.2 years ago by melnuesch ▴ 10

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7.5k

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limma microarray volcanoplot color

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by dmm204 • 0

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2.2k

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phyloseq color ggplot2

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by sarahmacdonald86 • 0

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1.4k

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diffbind color

updated 8.1 years ago by Gord Brown ▴ 670 • written 8.1 years ago by Gary ▴ 20

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1.5k

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Gviz color

updated 8.5 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.5 years ago by Malcolm Cook ★ 1.6k

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1.2k

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color GeneRegionTrack

8.6 years ago senanu.pearson • 0

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4.6k

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DESeq2 color R package

updated 8.7 years ago by Mike Smith ★ 6.6k • written 8.7 years ago by ChIP-Tease • 0

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2.5k

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ggbio autoplot color vignette

updated 9.0 years ago by aaron ▴ 10 • written 9.0 years ago by timothypyork • 0

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Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Votes

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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