Bioconductor Code

Showing : code • reset

vote

723

views

estimator roughmethodofmoments DESeq2 R Code

updated 2.9 years ago by Basti ▴ 780 • written 2.9 years ago by stew • 0

vote

replies

1.3k

views

Coc code conduct Bioconductor News

4.6 years ago Laurent Gatto 1.6k

votes

replies

1.3k

views

r code rna wobble

7.2 years ago fawazfebin ▴ 60

votes

replies

5.0k

views

goseq DESEQ2 RSTUDIO CODE

updated 9.5 years ago by Steve Lianoglou ★ 13k • written 9.5 years ago by amyfm ▴ 10

votes

2.7k

views

edgeR rpkm source code

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by thibault.lorin ▴ 10

5 results • Page 1 of 1

Recent ...

Replies

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

Awards • All

Great Question to inzirio ▴ 10