Bioconductor Cnetplot

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cnetplot DESeq2

3 months ago Blandine • 0

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cnetplot R clusterProfiler

updated 2.1 years ago by Guido Hooiveld ★ 4.1k • written 2.2 years ago by YNKIM ▴ 10

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clusterProfiler enrichplot cnetplot GuangchuangYu

updated 2.7 years ago by Guangchuang Yu ★ 1.2k • written 2.9 years ago by adR ▴ 40

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clusterProfiler enrichKEGG cnetplot

3.4 years ago fatimaruizdelabastida ▴ 10

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clusterProfiler enrichplot cnetplot

updated 5.3 years ago by James W. MacDonald 68k • written 5.3 years ago by anders.tondell ▴ 30

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

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Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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