Bioconductor Cluster

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770

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geneexp pheatmap heatmaps cluster

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by pehove2385 • 0

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753

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clusterProfiler cluster

8 months ago Yael • 0

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4.6k

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Network cluster WGCNA RNASeq

updated 18 months ago by James W. MacDonald 67k • written 18 months ago by chiwut.wong • 0

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2.1k

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cluster clusterProfiler KEGG

21 months ago • updated 20 months ago ruba-mahmoud • 0

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1.9k

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cluster OrgDb clusterProfiler

written 2.2 years ago by Chruut • 0

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822

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cluster qpcr qpcrNorm clusterProfiler HTqPCR

2.2 years ago Javier • 0

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2.2k

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scran Clustering SingleCellExperiment annotate cluster

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by achoppe ▴ 10

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979

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RNASeq Clustering cluster WGCNA

2.8 years ago chiwut.wong • 0

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1.7k

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biomaRt R cluster

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by camerond • 0

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2.3k

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SingleCellExperiment cluster identities sce

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by reinepapillon • 0

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879

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TCseq microwarray cluster counts normalization

5.5 years ago bioyas ▴ 10

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2.3k

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cluster mfuzz gene names

updated 8.9 years ago by Assa Yeroslaviz ★ 1.5k • written 8.9 years ago by thomas.dobrenel • 0

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1.4k

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quasr parallel cluster

9.0 years ago rna seq ▴ 90

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1.6k

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cluster

9.1 years ago niavarani ▴ 10

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4.7k

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cluster mclust limma clusplot kmeans

9.5 years ago svlachavas ▴ 840

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3.3k

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rnbeads gs ghostscript shared libraries cluster

9.5 years ago bmreilly • 0

16 results • Page 1 of 1

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Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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