Showing : chromosome • reset
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How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
23 months ago • updated 22 months ago Liliian • 0
3
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5
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2.4k
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Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 3.2 years ago by 16k • written 3.2 years ago by ▴ 40
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4
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Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 19 months ago by 68k • written 4.6 years ago by • 0
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4
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985
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Genomic Annotation Package Ensembl
Chromosome Annotation
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 50
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Parsing error creating tx2gene object for tximport
tximport GCF feature table parsing error chromosome
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
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Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
4.9 years ago heiko_kin ▴ 60
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Differential Expression by Chromosome using edgeR
edgeR chromosome RNAseq
updated 4.9 years ago by ★ 1.4k • written 4.9 years ago by • 0
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
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What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome chromosome reference genome
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 10
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5
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how to plot human genome chromosome Ideogram with each length by Gviz
Gviz chromosome ideogram
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 10
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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