Bioconductor Chromosome

Showing : chromosome • reset

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990

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gene chromosome proteincodinggene

21 months ago Liliian • 0

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2.4k

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GenomicRanges split chromosome TxDb

updated 3.1 years ago by Hervé Pagès 16k • written 3.1 years ago by jon.klonowski ▴ 40

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13k

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SNP rs id Biomart Chromosome coordinates

updated 18 months ago by James W. MacDonald 67k • written 4.5 years ago by Mahan • 0

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959

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Chromosome Annotation

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by Bine ▴ 50

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1.0k

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tximport GCF feature table parsing error chromosome

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by knholm • 0

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699

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RefSeq Chromosome Mutalyzer

4.8 years ago heiko_kin ▴ 60

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644

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edgeR chromosome RNAseq

updated 4.8 years ago by swbarnes2 ★ 1.4k • written 4.8 years ago by missmoparker • 0

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966

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homo sapiens chromosome

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by xchen8 • 0

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2.4k

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bsgenome chromosome reference genome

updated 6.9 years ago by Hervé Pagès 16k • written 6.9 years ago by Nathan Sheffield ▴ 10

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2.9k

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Gviz chromosome ideogram

updated 7.9 years ago by bernatgel ▴ 150 • written 7.9 years ago by dulunar ▴ 10

10 results • Page 1 of 1

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Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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