Bioconductor Chromatin

Showing : chromatin • reset

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1.7k

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hic diffhic chromatin bedpe

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by gryderart • 0

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1.4k

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epigenomics RNA methylation RNA dynamics chromatin computational biology Job

7.1 years ago mattia pelizzola ▴ 200

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2.4k

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diffbind read counting warning message chromatin atac-seq

updated 7.2 years ago by Gord Brown ▴ 670 • written 7.2 years ago by tgjohnst • 0

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5.1k

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ATAC differential binding analysis no replicates DEseq2 chromatin

7.9 years ago BioinfGuru ▴ 70

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2.0k

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Genomic Assays Chromatin Computational Biology Job

10.2 years ago Doe, Aimee ▴ 40

5 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k