Showing : champ • reset
0
votes
0
replies
81
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
9 days ago elgomez • 0
1
vote
9
replies
2.9k
views
Error using champ.import
ChAMP EPICv2
updated 4 weeks ago by • 0 • written 16 months ago by • 0
1
vote
1
reply
365
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 11 weeks ago by 67k • written 11 weeks ago by • 0
0
votes
4
replies
492
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 3 months ago by 4.1k • written 3 months ago by • 0
3
votes
12
replies
3.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 3 months ago by ▴ 200 • written 12 months ago by ▴ 10
0
votes
0
replies
390
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
4 months ago Mathu • 0
0
votes
1
reply
336
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 4 months ago by ▴ 780 • written 4 months ago by • 0
0
votes
3
replies
1.1k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 5 months ago by 4.1k • written 5 months ago by • 0
2
votes
3
replies
675
views
Problem installing ChAMP on a MacBook
ChAMP
updated 6 months ago by 4.1k • written 6 months ago by • 0
0
votes
7
replies
1.1k
views
ChAMP installation issue
Cha ChAMP
updated 6 months ago by 67k • written 6 months ago by • 0
2
votes
4
replies
803
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 7 months ago by 67k • written 7 months ago by • 0
1
vote
2
replies
415
views
Error in champ.load(): The following specified files do not exist
ChAMP
7 months ago Sherin • 0
1
vote
1
reply
961
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 9 months ago by 67k • written 9 months ago by • 0
0
votes
0
replies
427
views
how to solve this error?
ChAMPdata ChAMP
9 months ago Meghana • 0
0
votes
4
replies
2.0k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 13 days ago by • 0 • written 10 months ago by • 0
0
votes
0
replies
413
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
9 months ago Thalita • 0
0
votes
7
replies
1.1k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 11 months ago by ▴ 780 • written 11 months ago by • 0
2
votes
1
reply
979
views
ChAMP can't be found in Bioc3.18?
ChAMP
12 months ago ramonfallon ▴ 20
0
votes
7
replies
2.3k
views
error with champ.load
ChAMP champ methylation
updated 15 months ago by • 0 • written 4.6 years ago by • 0
0
votes
3
replies
976
views
ChAMP trouble reading csv file
ChAMP
written 16 months ago by • 0
1
vote
16
replies
4.4k
views
error in ChAMP loading file
ChAMP
updated 8 months ago by • 0 • written 2.0 years ago by • 0
3
votes
7
replies
6.2k
views
error with champ.load
champ
written 7.1 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 18 months ago by • 0 • written 3.7 years ago by • 0
0
votes
3
replies
942
views
Error in champ.load() function
ChAMP
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
2
replies
1.1k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 18 months ago by 67k • written 18 months ago by • 0
0
votes
2
replies
1.4k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
19 months ago • updated 18 months ago arisarkar88 ▴ 40
2
votes
8
replies
3.0k
views
Problem at champ.load
ChAMPdata ChAMP
updated 13 days ago by • 0 • written 19 months ago by • 0
0
votes
1
reply
871
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 4 months ago by • 0 • written 19 months ago by • 0
0
votes
0
replies
517
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
19 months ago Kan • 0
0
votes
2
replies
1.0k
views
error in champ.SVD
svd methylation champ
updated 19 months ago by 4.1k • written 19 months ago by • 0
0
votes
3
replies
1.6k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 7.4 years ago by • 0
1
vote
1
reply
1.0k
views
champ.load IDAT files from subdirectories
ChAMP
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
0
votes
1
reply
1.5k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 23 months ago by 67k • written 23 months ago by ▴ 10
1
vote
1
reply
868
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 23 months ago by 67k • written 23 months ago by • 0
0
votes
1
reply
754
views
Champ.impute - myLoad not found
ChAMP
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
votes
3
replies
1.4k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.6 years ago • updated 2.5 years ago ramonfallon ▴ 20
0
votes
1
reply
1.5k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by ▴ 20
0
votes
7
replies
3.2k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.1 years ago by 67k • written 2.5 years ago by • 0
0
votes
4
replies
1.7k
views
Problem installing ChAMP package.
ChAMP
2.6 years ago Yu-min • 0
0
votes
1
reply
1.2k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
0
votes
1
reply
1.0k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.7 years ago by • 0 • written 2.7 years ago by • 0
1
vote
2
replies
3.1k
views
Error using ChAMP SVD analysis
ChAMP
updated 20 months ago by • 0 • written 3.4 years ago by • 0
0
votes
0
replies
1.1k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
2.9 years ago behr201 • 0
0
votes
3
replies
1.3k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.9 years ago by ▴ 780 • written 2.9 years ago by • 0
0
votes
0
replies
1.0k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.0 years ago Paulina • 0
3
votes
4
replies
9.8k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 2.2 years ago by • 0 • written 3.0 years ago by • 0
0
votes
2
replies
1.1k
views
problems opening ChAMP
ChAMP
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
0
votes
1
reply
1.3k
views
error in champ.norm
champ.norm ChAMP
updated 3.1 years ago by ★ 4.0k • written 3.1 years ago by • 0
0
votes
0
replies
919
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
3.2 years ago FWNL15 • 0
0
votes
2
replies
1.5k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
3.2 years ago Jinyue • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
United States, 3 minutes ago
Spain, 5 minutes ago
Denmark, 6 minutes ago
France, 43 minutes ago
Belgium, 1 hour ago
Traffic: 737 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6