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cellcode
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cell analysis- significance output perturbed in shiny environment
cellcode
significance
8.6 years ago
christopher.clarskon15
▴ 20
1
vote
1
reply
2.1k
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CellMix compare results to CellCODE
cellmix
cellcode
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
christopher.clarskon15
▴ 20
1
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1
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1.5k
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reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 8.7 years ago by
Andrzej Oleś
▴ 750 • written 8.7 years ago by
christopher.clarskon15
▴ 20
1
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1
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1.7k
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CellCODE estimate cell proportions SPV analysis grouping comparisons faulty
CellCODE
differential gene expression
8.7 years ago
christopher.clarskon15
▴ 20
4 results • Page
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Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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