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txdb granges cds orf R

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by q.thomas • 0

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genomeintervals UTRs exons CDS GenomicRanges

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by rubi ▴ 110

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biomart bioconductor grangeslist cds ribosome profiling

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genomicfeatures txdb.hsapiens.ucsc.hg19.knowngene cds

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cds

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genomicfeatures genomicranges cds overlap

updated 9.4 years ago by Michael Lawrence ★ 11k • written 9.4 years ago by madsheilskov ▴ 10

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genomicfeatures genomicranges cds overlap

updated 3.4 years ago by balajee • 0 • written 9.4 years ago by madsheilskov ▴ 10

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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k