Showing : cdf • reset
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crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray cdf crlmm
7 months ago mayra.haedo • 0
0
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1
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1.1k
views
rma normalization using microarray data
cdf
updated 23 months ago by 67k • written 23 months ago by • 0
0
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2
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1.5k
views
3' microarray data using Affy - can't find cdf file, please help!
Affy microarray cdf
updated 4.9 years ago by 67k • written 4.9 years ago by • 0
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1
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1.1k
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Still Not Recognizing CDF
affy CDF
5.0 years ago ekl • 0
0
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4
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1.1k
views
CDF still not found
CDF Package
updated 5.0 years ago by 67k • written 5.0 years ago by • 0
1
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5
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2.1k
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CDf files in R
affy CDF
updated 5.0 years ago by 67k • written 5.0 years ago by • 0
0
votes
1
reply
1.8k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 5.8 years ago by 0 • written 17.9 years ago by ★ 2.2k
2
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5
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1.3k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 6.0 years ago by ★ 4.1k • written 6.0 years ago by • 0
0
votes
1
reply
1.9k
views
Error in exprs(object)[index, , drop = FALSE] : subscript out of bounds while using GCRMA
gcrma wheatcdf cdf
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
0
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0
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1.6k
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creating custom cdf file
annotation cdf
6.4 years ago obaloglu • 0
0
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8
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4.4k
views
error ReadAffy
Arabidopsis thaliana cdf affy gcrma PROcess oligo xps Arabidopsis thaliana cdf affy xps
updated 6.6 years ago by • 0 • written 10.8 years ago by ▴ 300
2
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2
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3.0k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 6.6 years ago by 67k • written 6.6 years ago by • 0
0
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4
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1.8k
views
How to make custom CDF file for Clariom D human chip
clariom D CDF
updated 6.6 years ago by ★ 4.1k • written 6.6 years ago by ▴ 10
0
votes
2
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2.8k
views
Processing array with R
cdf software error affy R
updated 6.8 years ago by 67k • written 6.8 years ago by • 0
0
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0
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1.2k
views
segfault when trying to convert hta20_Hs_ENSE_22.cdf to binary format
affxparser cdf hta2.0
7.4 years ago relathman ▴ 20
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0
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1.3k
views
Minfi reading command error
minfi error command read.metharray.exp cdf
7.4 years ago niutster • 0
1
vote
3
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3.2k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.6 years ago yusuf.khan ▴ 10
0
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4
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1.6k
views
huex10stv2cdf annotation file needed
cdf microarray affy
updated 7.7 years ago by 67k • written 7.7 years ago by ▴ 40
0
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1
reply
1.0k
views
Custom cdf files and genes
cdf microarray r3.2.2
updated 7.8 years ago by 67k • written 7.8 years ago by • 0
0
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4
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1.3k
views
Could you give me some suggestions for update Affy .cdf file
cdf affy microarray
8.3 years ago cmzuo13 • 0
2
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3
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2.0k
views
i need AGI code as my probset
affy cdf probe
9.0 years ago • updated 8.7 years ago Angel ▴ 40
0
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2
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1.9k
views
How to use cdf version20 with oligo package
oligo cdf
updated 8.8 years ago by 67k • written 8.8 years ago by ▴ 10
0
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2
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1.7k
views
a question about getCdfInfo package in GCRMA, thanks for your help.
cdf cdf
updated 8.8 years ago by • 0 • written 13.1 years ago by ▴ 20
0
votes
5
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2.8k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray oligo cdf customcdf
updated 9.0 years ago by ★ 4.1k • written 9.0 years ago by ▴ 20
1
vote
1
reply
1.2k
views
altcdfenvs get wrapCdfEnvAffy error
software error microarray cdf
updated 9.3 years ago by 67k • written 9.3 years ago by ▴ 930
3
votes
7
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4.6k
views
miRNA microarray analysis
microarray cdf
updated 9.6 years ago by 51k • written 9.6 years ago by ▴ 10
0
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1
reply
3.1k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf microarray affy
updated 9.6 years ago by 67k • written 9.6 years ago by • 0
2
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2
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1.5k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 9.9 years ago by 67k • written 9.9 years ago by • 0
6
votes
2
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2.0k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 10.1 years ago by 51k • written 10.2 years ago by ★ 13k
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2
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2.2k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ★ 13k
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5
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2.2k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 10.2 years ago by ▴ 130 • written 10.2 years ago by ★ 13k
0
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1
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1.4k
views
Can't use package [pd.mapping250k.sty]
cdf cdf
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 70
0
votes
9
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3.0k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 10.3 years ago by ▴ 830 • written 10.3 years ago by ★ 13k
0
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4
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2.4k
views
.cel file processing is not working for an old array
cdf PROcess cdf PROcess
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 30
0
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4
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1.8k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.3 years ago by ★ 3.9k • written 10.3 years ago by 67k
0
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1
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1.5k
views
Error in Data.frame for mogene10stv1cdf and mogene10sttranscriptcluster.db
cdf cdf
updated 10.4 years ago by 67k • written 10.4 years ago by ▴ 50
0
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2
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3.9k
views
justRMA couldn't obtain CDF environment
cdf cdf
updated 10.4 years ago by 67k • written 10.4 years ago by ▴ 100
0
votes
2
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1.8k
views
makecdfenv package bug
cdf affy affxparser oligo cdf affy affxparser oligo
updated 10.4 years ago by ▴ 10 • written 10.4 years ago by 67k
0
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6
replies
1.7k
views
Package "makecdfenv"
cdf cdf
10.5 years ago James W. MacDonald 67k
0
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0
replies
1.3k
views
NaNs in RMA normalization of GSE31312
Normalization cdf Normalization cdf
10.5 years ago Guest User ★ 13k
0
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1
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1.8k
views
1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.5 years ago by ▴ 30 • written 10.5 years ago by ▴ 190
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1
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1.8k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.6 years ago by 67k • written 10.6 years ago by ★ 13k
0
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2
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2.5k
views
make.cdf.package Error in copySubstitute
GO cdf Biobase affy GO cdf Biobase affy
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 30
0
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1
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1.1k
views
problem in making cdf package_makecdfenv
Microarray cdf Microarray cdf
updated 10.7 years ago by 67k • written 10.7 years ago by ▴ 130
0
votes
3
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1.9k
views
CRLMM Annotation file
SNP Annotation cdf SNP Annotation cdf
updated 10.7 years ago by 67k • written 10.7 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Problem with this package
cdf cdf
updated 10.8 years ago by 67k • written 10.8 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Error during installation packages
cdf cdf
updated 10.8 years ago by 67k • written 10.8 years ago by ▴ 70
0
votes
0
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1.9k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
10.8 years ago Isaac Neuhaus ▴ 360
0
votes
3
replies
2.1k
views
how to extract probes for a probeset from PdInfo database?
miRNA cdf affy miRNA cdf affy
updated 10.8 years ago by ★ 4.3k • written 10.8 years ago by ★ 4.1k
0
votes
0
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1.6k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
10.8 years ago James W. MacDonald 67k
50 results • Page 1 of 1
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Comment: Problem at champ.load by andrew.gibbons • 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
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A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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