Showing : camera • reset
2
votes
3
replies
704
views
Explanation for ROAST results
CAMERA limma
updated 5 weeks ago by 52k • written 5 weeks ago by • 0
0
votes
2
replies
457
views
cameraPR() non directional test
CAMERA GeneSetEnrichment
9 weeks ago Hugo Varet ▴ 80
3
votes
4
replies
922
views
using limma trend workflow in CAMERA
CAMERA limma
8 months ago Jay • 0
3
votes
3
replies
799
views
One-sided tests with CAMERA-PR
CAMERA limma
updated 8 months ago by 52k • written 8 months ago by ▴ 10
4
votes
5
replies
1.6k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
12 months ago • updated 11 months ago Chris ▴ 20
3
votes
4
replies
777
views
Help with error using camera() in limma
CAMERA limma
12 months ago Chris ▴ 20
1
vote
3
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1.2k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 14 months ago by 52k • written 14 months ago by ▴ 10
1
vote
3
replies
1.2k
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 20 months ago by 52k • written 20 months ago by • 0
0
votes
3
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932
views
Battery gene sets for CAMERA limma
CAMERA
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
2
votes
2
replies
1.0k
views
how to make a group to apply the data to CAMERA
CAMERA
3.0 years ago • updated 2.9 years ago Akira • 0
4
votes
9
replies
2.5k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 4.5 years ago by ▴ 750 • written 4.5 years ago by • 0
0
votes
0
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831
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.6 years ago svlachavas ▴ 840
4
votes
11
replies
3.0k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.4 years ago by ★ 3.4k • written 5.4 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
10
votes
2
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3.5k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
7
votes
2
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1.8k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 60
0
votes
0
replies
1.4k
views
CAMERA error - isotopeProportionFits
camera metabolomics
7.3 years ago bhgyu ▴ 30
1
vote
2
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1.9k
views
Package won't recognise raw data files
camera metabolomics r
7.5 years ago bhgyu ▴ 30
0
votes
1
reply
1.7k
views
limma: Camera() about the input data
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by • 0
3
votes
1
reply
1.4k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by ▴ 40
0
votes
1
reply
1.4k
views
LIMMA Camera missing IDs.
limma camera
updated 7.8 years ago by 52k • written 7.8 years ago by • 0
0
votes
6
replies
2.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 40
1
vote
0
replies
1.2k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
8.2 years ago Andy91 ▴ 60
0
votes
7
replies
3.0k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.2 years ago by 52k • written 8.2 years ago by • 0
3
votes
2
replies
1.5k
views
how to deal with technical replicates in limma camera
limma camera
updated 8.4 years ago by 52k • written 8.4 years ago by ▴ 20
0
votes
2
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1.8k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.6 years ago by 52k • written 8.6 years ago by • 0
0
votes
3
replies
2.3k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 8.6 years ago by 52k • written 8.6 years ago by ▴ 20
1
vote
3
replies
2.4k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
3
votes
7
replies
2.1k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 8.7 years ago by 52k • written 8.7 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 8.8 years ago by 52k • written 8.8 years ago by ▴ 20
2
votes
4
replies
2.2k
views
Getting gene ID's from camera results
limma camera
updated 9.0 years ago by ▴ 150 • written 9.0 years ago by ▴ 110
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
9.0 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.5k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 10
3
votes
4
replies
2.3k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 9.2 years ago by 52k • written 9.2 years ago by ▴ 30
8
votes
4
replies
6.7k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 180
0
votes
1
reply
1.4k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 9.2 years ago by 52k • written 11.9 years ago by ▴ 110
4
votes
12
replies
3.0k
views
Limma Camera error
limma camera
9.5 years ago ea1402 ▴ 20
5
votes
2
replies
2.5k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 9.7 years ago by 52k • written 9.7 years ago by ▴ 150
10
votes
9
replies
7.6k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 9.8 years ago by ▴ 20 • written 9.8 years ago by ▴ 60
8
votes
4
replies
2.1k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 9.9 years ago by 52k • written 9.9 years ago by ★ 7.9k
3
votes
4
replies
5.7k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 10.0 years ago by 52k • written 10.6 years ago by • 0
0
votes
1
reply
3.0k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 10.0 years ago by 52k • written 10.0 years ago by • 0
0
votes
2
replies
1.6k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.3 years ago by 52k • written 10.3 years ago by • 0
0
votes
3
replies
1.7k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ★ 13k
0
votes
0
replies
2.2k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
11.1 years ago Robert Ivanek ▴ 750
0
votes
0
replies
1.3k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
11.3 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.6k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
11.5 years ago Gordon Smyth 52k
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
11.5 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.8k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 11.6 years ago by ★ 11k • written 11.6 years ago by ▴ 40
0
votes
2
replies
2.2k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 11.8 years ago by 52k • written 11.8 years ago by ▴ 190
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Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k
You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel
Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k
You show how you modified the container, but not how you are running it, which is the critical part.
Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0
Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …
Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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