Showing : bumphunter • reset
0
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397
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minfi - bumphunter value problem
bumphunter minfiData minfi bumphun
updated 4 months ago by 67k • written 4 months ago by • 0
0
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3
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975
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 13 months ago by ▴ 780 • written 13 months ago by • 0
0
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1
reply
847
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 20 months ago by 67k • written 20 months ago by • 0
0
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0
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892
views
Error: 'bumphunter()' only supports matrix-backed minfi objects.
bumphunter minfi genomi
2.4 years ago runye • 0
0
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0
replies
873
views
Does bump hunter support Infinium Mouse Methylation BeadChip Array data?
bumphunter
2.7 years ago ZHAOHUI • 0
0
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9
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3.6k
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clarification about bumphunter value output
minfi bumphunter
updated 18 months ago by • 0 • written 6.7 years ago by • 0
0
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4
replies
1.1k
views
Fix regions for bumphunter
bumphunter DMR methylation minfi
4.8 years ago i.s.brorson • 0
0
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2
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1.0k
views
Bumphunter output "regions" of 1 probe (L =1)
DMR bumphunter EPIC chip
4.8 years ago i.s.brorson • 0
0
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1
reply
1.1k
views
Error:package or namespace load failed for 'bumphunter': object "path" is not exported by namespace:Rsamtools
minfi bumphunter Rsamtools
5.4 years ago Boran Gao • 0
2
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4
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1.7k
views
bumphunter stalls on "Smoothing coefficients"
bumphunter ChAMP
updated 5.5 years ago by ▴ 290 • written 5.5 years ago by ▴ 10
6
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5
replies
1.6k
views
dmrseq installation failed
installation problem dmrseq bumphunter
updated 6.0 years ago by 4.1k • written 6.0 years ago by ▴ 10
0
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3
replies
2.4k
views
Dependency installation error due to no longer available CRAN packages ('rngtools', 'pkgmaker')
installation minfi bumphunter
updated 6.5 years ago by ▴ 740 • written 6.5 years ago by • 0
2
votes
6
replies
2.2k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.5 years ago by ▴ 200 • written 6.5 years ago by • 0
0
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2
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1.7k
views
Bumphunter error: subscript out of bounds
bumphunter DMR doparallel multicore
updated 16 months ago by • 0 • written 6.5 years ago by • 0
1
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5
replies
2.6k
views
Meaning of the value column in bumphunter output (minfi package)
minfi bumphunter
updated 6.7 years ago by • 0 • written 7.5 years ago by • 0
1
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0
replies
1.6k
views
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene
7.1 years ago Leonardo Collado Torres ★ 1.1k
2
votes
8
replies
4.4k
views
"minfi" loading problem because of couldn't "bumphunter" load
bumphunter minfi loading error rtracklayer
updated 7.5 years ago by • 0 • written 7.5 years ago by ▴ 10
1
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3
replies
1.7k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.6 years ago by 67k • written 7.6 years ago by ▴ 10
0
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3
replies
2.1k
views
Controlling for confounding variables in bumphunter
minfi bumphunter confounders
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
0
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1
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1.8k
views
"Error in NSBS - subscript contains NAs or out-of-bounds indices" for bumphunter `matchGenes`
bumphunter
7.7 years ago jon.barenboim • 0
0
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0
replies
1.6k
views
bumphunter P values and significance testing
minfi bumphunter
7.7 years ago cardenasca ▴ 40
4
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4
replies
3.4k
views
bumphunter output clarification: p values achieved with b=1000: further correction needed?
methylation dmr analysis bumphunter
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
1
vote
4
replies
4.7k
views
bumphunter output clarification
bumphunter DMR DMR analysis minfi bioconductor
updated 7.9 years ago by ▴ 60 • written 7.9 years ago by • 0
0
votes
4
replies
2.4k
views
Using Bumphunter and SVA together in Minfi: bumphunterEngine nullMethod warning and FWER calculations
minfi sva bumphunter
8.0 years ago • updated 7.9 years ago brhead ▴ 40
6
votes
2
replies
4.7k
views
Plotting Differentially Methylated Regions
minfi bumphunter 450k region
updated 7.9 years ago by ▴ 80 • written 8.7 years ago by ▴ 40
0
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1
reply
1.3k
views
Bumphunter Algorithm Returns Regions with very few CpGs
bumphunter minfi
written 8.1 years ago by • 0
2
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6
replies
1.7k
views
bumphunter of multi covariates
bumphunter
8.3 years ago Asma rabe ▴ 290
0
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3
replies
1.2k
views
minfi devel error
bumphunter
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 290
0
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2
replies
1.2k
views
Runing into error while trying GRanges from R
rnaseq bumphunter genomicranges
8.4 years ago alva.james • 0
0
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1
reply
1.3k
views
error when using bumphunter package with illumina 450k data
minfi bumphunter DNA methylation illumina450k
updated 8.4 years ago by 67k • written 8.4 years ago by • 0
2
votes
9
replies
3.1k
views
bumphunter beta values
methylation minfi bumphunter
updated 8.6 years ago by 67k • written 8.6 years ago by ▴ 50
0
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0
replies
1.2k
views
How to retrieve the (smoothed) baseline values from the bumphunting output object?
bumphunter
8.8 years ago fabian.schroeder • 0
1
vote
2
replies
3.6k
views
minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.8 years ago by ▴ 30 • written 10.5 years ago by ★ 4.1k
0
votes
3
replies
2.2k
views
Paired samples and interactions models with bumphunter?
minfi bumphunter design and contrast matrix paired samples limma
8.8 years ago david.watson ▴ 30
1
vote
0
replies
1.3k
views
News: Bug found and fixed in bumphunter's bootstrap method
bumphunter News
9.1 years ago rafa ▴ 60
3
votes
6
replies
2.4k
views
Complex Model Design with Bumphunter (Minfi)
minfi bumphunter model.matrix linear model
updated 20 months ago by • 0 • written 9.4 years ago by ▴ 370
0
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0
replies
933
views
Bumphunter Output Details
bumphunter
9.6 years ago andrew.j.skelton73 ▴ 370
4
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10
replies
3.2k
views
Using bumphunter with non-human genomes
bumphunter
updated 9.9 years ago by ★ 1.1k • written 10.0 years ago by ▴ 40
3
votes
5
replies
2.4k
views
bumphunter::annotateNearest with non-human genome
bumphunter
updated 9.9 years ago by ★ 1.1k • written 10.0 years ago by ▴ 40
2
votes
1
reply
2.4k
views
News: Changes to matchGenes in bumphunter
annotation bumphunter News
updated 10.0 years ago by 42k • written 10.0 years ago by ▴ 60
0
votes
3
replies
2.3k
views
smoothing function in bumphunter in minfi
minfi bumphunter minfi bumphunter
10.5 years ago • updated 10.4 years ago Kasper Daniel Hansen ★ 6.5k
0
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1
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1.8k
views
loessByCluster returning error in smooth function in bumphunter
bumphunter bumphunter
10.5 years ago Jiayi Sun ▴ 40
0
votes
0
replies
1.6k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
10.5 years ago swarmqq@gmail.com ▴ 10
2
votes
1
reply
1.9k
views
smoothing function in bumphunter in minfi
minfi bumphunter minfi bumphunter
updated 10.5 years ago by ★ 6.5k • written 10.5 years ago by ★ 13k
0
votes
5
replies
3.8k
views
doParallel with Bumphunter gives Error in mcfork()
minfi bumphunter minfi bumphunter
updated 10.6 years ago by ★ 4.2k • written 10.6 years ago by ★ 13k
0
votes
0
replies
1.8k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.7 years ago Allegra Petti ▴ 120
0
votes
6
replies
3.2k
views
DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.7 years ago by 67k • written 10.7 years ago by ★ 13k
0
votes
12
replies
3.3k
views
bumphunter DMRs difficulties
PROcess minfi bumphunter PROcess minfi bumphunter
updated 10.8 years ago by ★ 6.5k • written 10.8 years ago by ▴ 160
0
votes
3
replies
2.1k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.8 years ago by ▴ 20 • written 10.8 years ago by ★ 4.2k
0
votes
0
replies
1.4k
views
minfi release 1.8
SNP Annotation minfi bumphunter SNP Annotation minfi bumphunter
10.8 years ago C T ▴ 20
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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