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A way to find which genome builds a package supports
build
genome
2.1 years ago
Dmitry
• 0
0
votes
1
reply
895
views
Error in the Multiple platform build/check report for BioC 3.15
build
BuildReport
updated 3.2 years ago by
Mike Smith
★ 6.6k • written 3.2 years ago by
Meriem
• 0
1
vote
1
reply
603
views
Mac/Windows test build systems?
build
updated 3.4 years ago by
shepherl
4.1k • written 3.4 years ago by
hstern2
• 0
0
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0
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1.2k
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News:
Release Deadline: Passing R CMD build and R CMD check
package
build
build/check error
check
release
News
7.0 years ago
shepherl
4.1k
1
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3
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1.8k
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How to access error log from build report
build
testthat
cmd check
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
Peter
• 0
2
votes
3
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1.5k
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Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r
build
genome
chicken-sheme
9.4 years ago
pertille
• 0
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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