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boxplot
•
reset
2
votes
6
replies
3.5k
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
12 months ago
Chris
▴ 20
0
votes
1
reply
821
views
How to add pvalue to boxplot?
boxplot
ggplot2
updated 2.2 years ago by
ATpoint
★ 4.8k • written 2.2 years ago by
Sooni
▴ 10
0
votes
5
replies
1.2k
views
knitr error in sort.int - unable to knit a chunk with boxplot codes
knitr
boxplot
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.3k
views
boxplot Error in Bioconductor
boxplot
bioconductor
R
error
5.3 years ago
l154359
• 0
2
votes
3
replies
1.9k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 5.9 years ago by
Wei Shi
★ 3.6k • written 5.9 years ago by
Raito92
▴ 60
0
votes
0
replies
928
views
How to color samples in boxplot based on treatment or control using covdesc file
affy
boxplot
6.1 years ago
pratikshasharma47
• 0
1
vote
1
reply
891
views
Boxplot of merged data set ,colored according to control vs treatment
boxplot
affymetrix data
diferential expression
6.1 years ago
pratikshasharma47
• 0
2
votes
2
replies
900
views
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
boxplot
software error
updated 6.1 years ago by
Gordon Smyth
52k • written 6.1 years ago by
Raito92
▴ 60
7
votes
11
replies
5.8k
views
Comparing means of VST tranformed RNA-Seq counts in different groups of samples with boxplots
VST
deseq2
boxplot
rnaseq
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
Konstantinos Yeles
▴ 80
0
votes
2
replies
1.2k
views
understanding the meaning boxplot
boxplot
updated 8.1 years ago by
Peter Langfelder
★ 3.0k • written 8.1 years ago by
farahqureshi5
• 0
0
votes
4
replies
5.1k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package
boxplot
hgu133plus2
oligo package
updated 8.1 years ago by
James W. MacDonald
68k • written 8.1 years ago by
Javier Pérez Florido
▴ 840
1
vote
4
replies
2.4k
views
EdgeR differentially expressed genes vs normal boxplot visualization
edgeR
boxplot
8.2 years ago
snowru
• 0
3
votes
10
replies
2.5k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 9.0 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.0 years ago by
enricoferrero
▴ 680
1
vote
8
replies
2.2k
views
boxplot, microarray, hugene 2.0 st
boxplot
microarray
pd.hugene.2.0.st
10.0 years ago
kanacska
▴ 10
0
votes
2
replies
1.4k
views
boxplot on an Rle object?
Rle
boxplot
10.3 years ago
Johannes Rainer
★ 2.1k
15 results • Page
1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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