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boxplot
•
reset
2
votes
6
replies
1.7k
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
7 months ago
Chris
▴ 20
0
votes
1
reply
714
views
How to add pvalue to boxplot?
boxplot
ggplot2
updated 21 months ago by
ATpoint
★ 4.5k • written 21 months ago by
Sooni
▴ 10
0
votes
5
replies
980
views
knitr error in sort.int - unable to knit a chunk with boxplot codes
knitr
boxplot
updated 4.8 years ago by
James W. MacDonald
67k • written 4.8 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.2k
views
boxplot Error in Bioconductor
boxplot
bioconductor
R
error
4.9 years ago
l154359
• 0
2
votes
3
replies
1.7k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 5.4 years ago by
Wei Shi
★ 3.6k • written 5.4 years ago by
Raito92
▴ 60
0
votes
0
replies
846
views
How to color samples in boxplot based on treatment or control using covdesc file
affy
boxplot
5.6 years ago
pratikshasharma47
• 0
1
vote
1
reply
795
views
Boxplot of merged data set ,colored according to control vs treatment
boxplot
affymetrix data
diferential expression
5.6 years ago
pratikshasharma47
• 0
2
votes
2
replies
794
views
Boxplot object (from the RNASeqGeneEdgeRQL workflow) returning a blank file...
boxplot
software error
updated 5.6 years ago by
Gordon Smyth
51k • written 5.6 years ago by
Raito92
▴ 60
7
votes
11
replies
5.4k
views
Comparing means of VST tranformed RNA-Seq counts in different groups of samples with boxplots
VST
deseq2
boxplot
rnaseq
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
Konstantinos Yeles
▴ 80
0
votes
2
replies
1.1k
views
understanding the meaning boxplot
boxplot
updated 7.6 years ago by
Peter Langfelder
★ 3.0k • written 7.6 years ago by
farahqureshi5
• 0
0
votes
4
replies
4.8k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package
boxplot
hgu133plus2
oligo package
updated 7.7 years ago by
James W. MacDonald
67k • written 7.7 years ago by
Javier Pérez Florido
▴ 840
1
vote
4
replies
2.2k
views
EdgeR differentially expressed genes vs normal boxplot visualization
edgeR
boxplot
7.7 years ago
snowru
• 0
3
votes
10
replies
2.3k
views
Shifted dashed frame in Gviz boxplot
gviz
boxplot
updated 8.5 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.6 years ago by
enricoferrero
▴ 660
1
vote
8
replies
2.0k
views
boxplot, microarray, hugene 2.0 st
boxplot
microarray
pd.hugene.2.0.st
9.6 years ago
kanacska
▴ 10
0
votes
2
replies
1.3k
views
boxplot on an Rle object?
Rle
boxplot
9.8 years ago
Johannes Rainer
★ 2.1k
15 results • Page
1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
by
Ai
• 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2
by
icecreamlover
• 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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