Bioconductor Biseq

Showing : biseq • reset

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905

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BiSeq

3.2 years ago thomas.koefoed • 0

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984

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Biseq Methylation DMP DMR RRBS

4.8 years ago i.s.castanho • 0

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1.2k

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bedgraph .cov wig biseq coverage

4.8 years ago akhaira • 0

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944

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BiSeq testClusters error dmr

4.8 years ago akhaira • 0

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1.4k

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biseq beta regression

4.8 years ago akhaira • 0

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649

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Biseq

4.8 years ago akhaira • 0

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1.8k

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BiSeq DMR

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by akhaira • 0

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814

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BiSeq Coldata

4.9 years ago akhaira • 0

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896

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biseq R methylation

4.9 years ago AishaD • 0

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842

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biseq betaRegression RRBS Methylation

5.1 years ago i.s.castanho • 0

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971

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BiSeq Wald test Beta regression

6.2 years ago mira • 0

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1.2k

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biseq package installation r

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by lwh863 • 0

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1.2k

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biseq ccle

6.7 years ago spr ▴ 10

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1.3k

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dna methylation biseq

updated 7.3 years ago by Gordon Smyth 52k • written 7.3 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

8.1 years ago l.eijssen • 0

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1.6k

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biseq methylation dmr analysis

updated 8.3 years ago by Katja Hebestreit ▴ 130 • written 8.3 years ago by jjalmagro • 0

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2.2k

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biseq error trimClusters

updated 9.2 years ago by Katja Hebestreit ▴ 130 • written 9.3 years ago by kms68 • 0

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1.9k

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methylation linear model dmr bsseq biseq

9.4 years ago enricoferrero ▴ 680

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2.2k

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BiSeq readBismark

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by Neel Aluru ▴ 460

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2.9k

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dmr methylation deseq2 bsseq biseq

updated 9.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.5 years ago by enricoferrero ▴ 680

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3.8k

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biseq fdr data results

10.0 years ago • updated 9.9 years ago mnaymik ▴ 10

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2.4k

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biseq RRBS SAAP-BS coverage

10.0 years ago maria.maqueda • 0

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2.0k

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BiSeq BiSeq

updated 11.2 years ago by David Iles ▴ 130 • written 11.2 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Awards • All

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k