Bioconductor Biseq

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804

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BiSeq

2.9 years ago thomas.koefoed • 0

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913

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Biseq Methylation DMP DMR RRBS

4.4 years ago i.s.castanho • 0

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1.1k

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bedgraph .cov wig biseq coverage

4.4 years ago akhaira • 0

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883

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BiSeq testClusters error dmr

4.5 years ago • updated 4.4 years ago akhaira • 0

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1.2k

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biseq beta regression

4.5 years ago akhaira • 0

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588

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Biseq

4.5 years ago akhaira • 0

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1.6k

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BiSeq DMR

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by akhaira • 0

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727

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BiSeq Coldata

4.6 years ago akhaira • 0

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809

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biseq R methylation

4.6 years ago AishaD • 0

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763

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biseq betaRegression RRBS Methylation

4.7 years ago i.s.castanho • 0

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889

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BiSeq Wald test Beta regression

5.9 years ago mira • 0

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1.1k

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biseq package installation r

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by lwh863 • 0

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1.1k

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biseq ccle

6.4 years ago spr ▴ 10

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1.3k

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dna methylation biseq

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

7.7 years ago l.eijssen • 0

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1.5k

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biseq methylation dmr analysis

updated 8.0 years ago by Katja Hebestreit ▴ 130 • written 8.0 years ago by jjalmagro • 0

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2.1k

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biseq error trimClusters

updated 8.9 years ago by Katja Hebestreit ▴ 130 • written 8.9 years ago by kms68 • 0

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1.8k

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methylation linear model dmr bsseq biseq

9.0 years ago enricoferrero ▴ 660

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2.1k

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BiSeq readBismark

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by Neel Aluru ▴ 460

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2.8k

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dmr methylation deseq2 bsseq biseq

updated 9.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.2 years ago by enricoferrero ▴ 660

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3.5k

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biseq fdr data results

9.7 years ago • updated 9.6 years ago mnaymik ▴ 10

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2.3k

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biseq RRBS SAAP-BS coverage

9.6 years ago maria.maqueda • 0

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1.9k

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BiSeq BiSeq

updated 10.9 years ago by David Iles ▴ 130 • written 10.9 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

Votes

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k