Bioconductor BiovizBase

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985

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biovizBase biovi

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by bernatgel ▴ 150

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962

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biovizBase ggbio

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by moldach ▴ 20

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1.2k

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ggbio biovizBase

8.7 years ago kevin.rue ▴ 350

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4.1k

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biovizbase installation

updated 10.2 years ago by Dan Tenenbaum ★ 8.2k • written 10.2 years ago by ville.q.rantanen • 0

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2.1k

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annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase

updated 10.5 years ago by Tengfei Yin ▴ 490 • written 10.5 years ago by Laurent Gatto 1.6k

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1.9k

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TranscriptDb biovizBase ggbio TranscriptDb biovizBase ggbio

updated 11.3 years ago by Tengfei Yin ▴ 490 • written 11.3 years ago by Malcolm Cook ★ 1.6k

6 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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