Showing : biomarkers • reset
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.5 years ago Sarah • 0
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.7 years ago Daniel Brewer ▴ 100
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Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
4.0 years ago Daniel Brewer ▴ 100
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
5.1 years ago Daniel Brewer ▴ 100
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How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq pathway analysis protein biomarkers
6.9 years ago emadelhewihy • 0
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DESeq2 with 4 groups, 5 timepoints and more...!
deseq2 biomarkers
updated 7.3 years ago by ▴ 690 • written 7.3 years ago by • 0
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Adaptive Lasso and CrossValidation for SNV selection
adaptive-lasso snv biomarkers cv glmnet
8.0 years ago crichard • 0
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Job: PhD position at CRUK Manchester Institute
Prostate cancer noncoding rna biomarkers machine learning Job
8.8 years ago Hui Sun Leong ▴ 10
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1.8k
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Machine learning methods for feature selection and possible correlation with clinical data
machinelearning clinicaldata biomarkers data integration bioconductor
9.7 years ago svlachavas ▴ 840
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Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration microarray bioconductor affymetrix biomarkers
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 840
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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