Showing : biomaRt • reset
2
votes
5
replies
728
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 21 days ago by 68k • written 21 days ago by ▴ 10
0
votes
2
replies
260
views
Error using useMart or useEnsembl
biomaRt
updated 21 days ago by 68k • written 21 days ago by • 0
0
votes
4
replies
332
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 22 days ago by 68k • written 22 days ago by • 0
2
votes
9
replies
655
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 2 days ago by • 0 • written 28 days ago by • 0
4
votes
9
replies
1.8k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 7 weeks ago by 68k • written 3 months ago by ▴ 20
0
votes
0
replies
313
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
3 months ago Ensembl_Jorge • 0
0
votes
1
reply
391
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 4 months ago by ★ 6.6k • written 4 months ago by • 0
2
votes
2
replies
1.3k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
4 months ago 2044291597 • 0
1
vote
3
replies
1.1k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 5 months ago by 68k • written 12 months ago by ▴ 10
1
vote
4
replies
1000
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 3 months ago by • 0 • written 5 months ago by • 0
1
vote
4
replies
795
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
6 months ago kschecht • 0
2
votes
8
replies
1.8k
views
biomaRt getLDS error
biomaRt
6 months ago mark.dunning ▴ 20
1
vote
2
replies
1.0k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
7 months ago Svitlana ▴ 10
0
votes
0
replies
353
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
7 months ago Reese • 0
0
votes
2
replies
587
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
8 months ago landenshanie ▴ 40
0
votes
0
replies
329
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
8 months ago Abiologist • 0
1
vote
0
replies
545
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
8 months ago Aleena ▴ 30
1
vote
3
replies
596
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 9 months ago by 68k • written 9 months ago by ▴ 30
2
votes
2
replies
898
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
1
reply
495
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
1
reply
1.2k
views
error in mapIds function
mapIds biomaRt
updated 11 months ago by 700 • written 11 months ago by • 0
0
votes
2
replies
1.1k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 months ago eefernan5 • 0
3
votes
3
replies
13k
views
How to find rsID with biomaRt in R
biomaRt
updated 12 months ago by 68k • written 3.9 years ago by ▴ 10
0
votes
1
reply
475
views
biomaRt issue
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
1
vote
5
replies
1.5k
views
BiomaRt download data error
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
6
votes
9
replies
2.5k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 12 months ago by • 0 • written 12 months ago by • 0
1
vote
1
reply
1.5k
views
Error with biomaRt
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
4
votes
2
replies
899
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 12 months ago by ★ 4.1k • written 12 months ago by • 0
2
votes
2
replies
1.2k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
12 months ago bd2000 ▴ 30
1
vote
0
replies
486
views
News: Ensembl 111 has been released
Ensembl biomaRt
13 months ago Benjamin ▴ 30
0
votes
2
replies
919
views
Problem with loading ensembl version 105.
biomaRt
13 months ago RC • 0
0
votes
1
reply
1.5k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 14 months ago by 68k • written 14 months ago by • 0
0
votes
3
replies
1.1k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 14 months ago by ★ 3.4k • written 14 months ago by ▴ 30
4
votes
12
replies
1.7k
views
Ensembl down???
biomaRt
14 months ago bas_work ▴ 30
3
votes
2
replies
772
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
14 months ago henrydionne ▴ 10
1
vote
2
replies
1.6k
views
How to find stop codons for a list of genes
stopcodon biomaRt
14 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.4k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
14 months ago • updated 11 months ago ScafioRuo • 0
12
votes
10
replies
13k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 10 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
3
replies
838
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 15 months ago by 52k • written 15 months ago by • 0
1
vote
4
replies
1.1k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
16 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
6.7k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 16 months ago by 700 • written 2.5 years ago by ▴ 20
0
votes
2
replies
729
views
Biomart - upstream region of 'coding'
biomaRt
updated 17 months ago by ★ 6.6k • written 17 months ago by ▴ 20
0
votes
0
replies
642
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
17 months ago ali.oghabian • 0
1
vote
5
replies
913
views
Errors with makeTxDbFromBiomart
biomaRt
updated 18 months ago by 68k • written 18 months ago by ▴ 10
3
votes
2
replies
2.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 18 months ago by ★ 4.1k • written 18 months ago by ▴ 10
0
votes
3
replies
1.3k
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 18 months ago by 16k • written 18 months ago by • 0
1
vote
2
replies
1.0k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
18 months ago Miguel • 0
0
votes
1
reply
888
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
2.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 18 months ago by 43k • written 19 months ago by ▴ 30
0
votes
1
reply
1.3k
views
multiple filters in biomaRt
biomaRt
updated 20 months ago by ▴ 10 • written 20 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
Awards • All
Teacher to Gordon Smyth 52k
Scholar to James W. MacDonald 68k
Popular Question to Sara ▴ 20
Scholar to Michael Love 43k
Popular Question to Malcolm Cook ★ 1.6k
Locations • All
United States, 1 minute ago
UPF, Barcelona, Spain, 12 minutes ago
WEHI, Melbourne, Australia, 2 hours ago
United States, 2 hours ago
Belgium, 2 hours ago
Traffic: 537 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6