Showing : biomaRt • reset
2
votes
4
replies
703
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
7 days ago • updated 6 days ago Benjamin ▴ 10
0
votes
0
replies
98
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
18 days ago Ensembl_Jorge • 0
0
votes
1
reply
234
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 5 weeks ago by ★ 6.6k • written 5 weeks ago by • 0
2
votes
2
replies
1.1k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
5 weeks ago 2044291597 • 0
1
vote
3
replies
779
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 9 weeks ago by 67k • written 9 months ago by ▴ 10
1
vote
2
replies
425
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
9 weeks ago varga.luca • 0
1
vote
4
replies
561
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
12 weeks ago kschecht • 0
2
votes
8
replies
1.0k
views
biomaRt getLDS error
biomaRt
3 months ago mark.dunning ▴ 20
1
vote
2
replies
849
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
4 months ago Svitlana ▴ 10
0
votes
0
replies
287
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
4 months ago Reese • 0
0
votes
2
replies
475
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
5 months ago landenshanie ▴ 40
0
votes
0
replies
247
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
5 months ago Abiologist • 0
1
vote
0
replies
327
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
5 months ago Aleena ▴ 30
1
vote
3
replies
478
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 6 months ago by 67k • written 6 months ago by ▴ 30
2
votes
2
replies
690
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 6 months ago by 67k • written 6 months ago by • 0
0
votes
1
reply
398
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 7 months ago by 67k • written 7 months ago by • 0
0
votes
1
reply
744
views
error in mapIds function
mapIds biomaRt
updated 8 months ago by 700 • written 8 months ago by • 0
0
votes
2
replies
953
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
8 months ago eefernan5 • 0
3
votes
3
replies
12k
views
How to find rsID with biomaRt in R
biomaRt
updated 9 months ago by 67k • written 3.7 years ago by ▴ 10
0
votes
1
reply
408
views
biomaRt issue
biomaRt
updated 9 months ago by ★ 6.6k • written 9 months ago by • 0
1
vote
5
replies
1.1k
views
BiomaRt download data error
biomaRt
updated 9 months ago by ★ 6.6k • written 9 months ago by • 0
6
votes
9
replies
1.6k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 9 months ago by • 0 • written 9 months ago by • 0
1
vote
1
reply
1.1k
views
Error with biomaRt
biomaRt
updated 9 months ago by ★ 6.6k • written 9 months ago by • 0
4
votes
2
replies
751
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 9 months ago by ★ 4.1k • written 9 months ago by • 0
2
votes
2
replies
988
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
9 months ago bd2000 ▴ 30
1
vote
0
replies
422
views
News: Ensembl 111 has been released
Ensembl biomaRt
9 months ago Benjamin ▴ 30
0
votes
2
replies
725
views
Problem with loading ensembl version 105.
biomaRt
10 months ago RC • 0
0
votes
1
reply
1.3k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 11 months ago by 67k • written 11 months ago by • 0
0
votes
3
replies
894
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 11 months ago by ★ 3.4k • written 11 months ago by ▴ 30
4
votes
12
replies
1.5k
views
Ensembl down???
biomaRt
11 months ago bas_work ▴ 30
3
votes
2
replies
688
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
11 months ago henrydionne ▴ 10
1
vote
2
replies
1.3k
views
How to find stop codons for a list of genes
stopcodon biomaRt
11 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.2k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
11 months ago • updated 8 months ago ScafioRuo • 0
12
votes
10
replies
12k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 7 months ago by • 0 • written 12 months ago by ▴ 20
0
votes
3
replies
720
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 12 months ago by 51k • written 12 months ago by • 0
1
vote
4
replies
961
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
13 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
5.8k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 13 months ago by 700 • written 2.2 years ago by ▴ 20
0
votes
2
replies
622
views
Biomart - upstream region of 'coding'
biomaRt
updated 14 months ago by ★ 6.6k • written 14 months ago by ▴ 20
0
votes
0
replies
559
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
14 months ago ali.oghabian • 0
1
vote
5
replies
825
views
Errors with makeTxDbFromBiomart
biomaRt
updated 14 months ago by 67k • written 14 months ago by ▴ 10
3
votes
2
replies
1.7k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 14 months ago by ★ 4.1k • written 14 months ago by ▴ 10
0
votes
3
replies
1.1k
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 15 months ago by 16k • written 15 months ago by • 0
1
vote
2
replies
929
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
15 months ago Miguel • 0
0
votes
1
reply
820
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 15 months ago by 67k • written 15 months ago by • 0
0
votes
1
reply
2.2k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 15 months ago by 42k • written 15 months ago by ▴ 30
0
votes
1
reply
1.1k
views
multiple filters in biomaRt
biomaRt
updated 17 months ago by ▴ 10 • written 17 months ago by • 0
2
votes
4
replies
1.3k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
17 months ago RuBBiT0 ▴ 10
1
vote
2
replies
1.2k
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 17 months ago by ★ 6.6k • written 17 months ago by • 0
0
votes
3
replies
783
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 18 months ago by ★ 6.6k • written 18 months ago by • 0
0
votes
3
replies
2.0k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 18 months ago by ▴ 70
50 results • Page 1 of 1
Recent ...
Replies
Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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