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bioconductor
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1.4k
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Package developing and interoperation with Bioconductor
Package
Bioconductor
written 4 weeks ago by
slizchap
• 0
0
votes
6
replies
1.7k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 14 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
576
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
updated 10 days ago by
shepherl
4.1k • written 10 days ago by
XFWu
• 0
0
votes
1
reply
459
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
6 months ago • updated 24 days ago
shepherl
4.1k
0
votes
0
replies
212
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
9 weeks ago
Maria Doyle
▴ 100
0
votes
3
replies
1.0k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
updated 15 days ago by
ht
• 0 • written 2.2 years ago by
Maria Doyle
▴ 100
0
votes
3
replies
447
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
9 weeks ago
gaye.yilmaz
• 0
0
votes
0
replies
197
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
10 weeks ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.0k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 9 weeks ago by
shepherl
4.1k • written 10 weeks ago by
azm.ana2
• 0
0
votes
0
replies
135
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
10 weeks ago
Maria Doyle
▴ 100
0
votes
0
replies
123
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
12 weeks ago
Maria Doyle
▴ 100
1
vote
0
replies
310
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
12 weeks ago
Maria Doyle
▴ 100
0
votes
3
replies
1.3k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.0 years ago by
Maria Doyle
▴ 100
0
votes
2
replies
415
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 3 months ago by
wise
• 0 • written 4 months ago by
Hongxiang
• 0
2
votes
1
reply
534
views
bioconductor packages on bioconda
Bioconductor
updated 5 months ago by
James W. MacDonald
68k • written 5 months ago by
risch.vinzent
• 0
1
vote
3
replies
724
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
5 months ago
Abiologist
• 0
10
votes
7
replies
2.0k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 5 months ago by
shepherl
4.1k • written 2.2 years ago by
L
▴ 50
1
vote
0
replies
843
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
5 months ago
shepherl
4.1k
0
votes
0
replies
322
views
News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
6 months ago
Maria Doyle
▴ 100
1
vote
3
replies
904
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 6 months ago by
James W. MacDonald
68k • written 6 months ago by
abhisek001
• 0
1
vote
2
replies
801
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2
Bioconductor
updated 7 months ago by
Michael Love
43k • written 7 months ago by
JT
▴ 10
0
votes
0
replies
320
views
News:
Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries
Community
Teaching
Bioconductor
7 months ago
Maria Doyle
▴ 100
2
votes
9
replies
1.4k
views
Can't post a question?
Bioconductor
updated 6 weeks ago by
DavideSant
• 0 • written 7 months ago by
blmurphy
• 0
2
votes
2
replies
562
views
How to read OSCA book?
BIOCON
OSCA
Bioconductor
7 months ago
zr
• 0
1
vote
2
replies
552
views
WARNING: No Bioconductor dependencies detected.
Bioconductor
Biocon
7 months ago
katja.danielzik
• 0
0
votes
3
replies
671
views
concentration tables suitable as input for new packages?
Bioconductor
written 7 months ago by
katja.danielzik
• 0
2
votes
0
replies
738
views
News:
Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025
Conference
Bioconductor
Community
7 months ago
Maria Doyle
▴ 100
0
votes
5
replies
1.1k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor
clusterProfiler
updated 7 months ago by
Lluís Revilla Sancho
▴ 760 • written 7 months ago by
semra
• 0
0
votes
1
reply
1.5k
views
News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
updated 24 days ago by
Morse
• 0 • written 7 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
1.5k
views
Unable to install/use limma
limma
Bioconductor
updated 7 months ago by
James W. MacDonald
68k • written 7 months ago by
Jennifer
• 0
1
vote
2
replies
506
views
Review process for delivering R packages
Bioconductor
8 months ago
XFWu
• 0
0
votes
1
reply
520
views
News:
BioCAsia 2024 Registration Now Open!
BioCAsia2024
Conference
Community
Bioconductor
8 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.2k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 8 months ago by
dbjohnson7
• 0
0
votes
0
replies
486
views
Job:
PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS
AI
Bioconductor
updated 8 months ago by
Tyler Sagendorf
▴ 10 • written 8 months ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
373
views
BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024
Community
Conference
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
451
views
News:
EuroBioC Updates: Important Deadlines
Conference
EuroBioC2024
Bioconductor
Community
EuroBioC
8 months ago
Maria Doyle
▴ 100
2
votes
4
replies
615
views
Bioconductor Submission question
Bioconductor
8 months ago
XFWu
• 0
0
votes
0
replies
363
views
News:
Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB
CAB
Bioconductor
8 months ago
shepherl
4.1k
0
votes
0
replies
373
views
EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community
Conference
Bioconductor
EuroBioC2024
8 months ago
Maria Doyle
▴ 100
0
votes
4
replies
938
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts
Subread
Bioconductor
9 months ago • updated 8 months ago
Jessica
• 0
1
vote
0
replies
667
views
News:
Bioconductor Package Download Rate Limitation (HTTP 429)
downloads
http429
http
Bioconductor
9 months ago
shepherl
4.1k
0
votes
2
replies
1.0k
views
Installing Bioconductor
Bioconductor
updated 9 months ago by
Lluís Revilla Sancho
▴ 760 • written 9 months ago by
mariyahgeorge14
• 0
0
votes
0
replies
412
views
News:
EuroBioC2024 Carpentries workshops Sep 2-3
Community
Workshop
Bioconductor
EuroBioC2024
9 months ago
Maria Doyle
▴ 100
0
votes
0
replies
401
views
News:
BioC2024 in-person registration closes soon (July 10)
BioC2024
Conference
Bioconductor
Community
9 months ago
Maria Doyle
▴ 100
0
votes
0
replies
502
views
Difference in Predictive component of PLS and OPLS Model
Metabolomics
plotGrouper
Bioconductor
ropls
PLSDAbatch
9 months ago
devarti.mahakalkar
• 0
0
votes
3
replies
731
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
10 months ago • updated 9 months ago
Abiologist
• 0
2
votes
2
replies
5.3k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 10 months ago by
Muhammad Abdullah
• 0 • written 7.8 years ago by
mdroog
▴ 10
0
votes
1
reply
578
views
BiomaRt listAttributes - which are external ?
Bioconductor
getBM
updated 10 months ago by
James W. MacDonald
68k • written 10 months ago by
Abiologist
• 0
4
votes
2
replies
1.4k
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor
featurecounts
subread
10 months ago
Rachael
• 0
1
vote
5
replies
2.5k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery
Bioconductor
updated 10 months ago by
ATpoint
★ 4.8k • written 10 months ago by
Isabel
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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