Showing : biocmanager • reset
0
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500
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Automatically install dependencies
Install dependencies biocmanager
updated 3 days ago by 4.1k • written 6 days ago by • 0
1
vote
3
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1.8k
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 4 months ago by 68k • written 4 months ago by ▴ 10
0
votes
0
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532
views
News: CRAN downtime
BiocManager Bioconductor
15 months ago shepherl 4.1k
5
votes
2
replies
1.3k
views
can't install DESeq2 ("unable to access index for repository")
biocmanager DESeq2
18 months ago Alessia ▴ 40
3
votes
5
replies
1.8k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 19 months ago by 6.7k • written 19 months ago by ▴ 20
0
votes
4
replies
1.3k
views
Unable to install BiocManager
Biocmanager R
updated 22 months ago by ▴ 50 • written 22 months ago by • 0
0
votes
2
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5.4k
views
Cannot install packages in R/BiocManager_Warning message: package(s) not installed when version(s) same as or greater than current; use `force = TR…
Bioconductor BioCManager ChIPseeker
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
2
votes
4
replies
3.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 2.2 years ago by • 0
0
votes
2
replies
1.1k
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 2.2 years ago by • 0
1
vote
3
replies
6.7k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 2.1 years ago by 4.1k • written 2.2 years ago by • 0
0
votes
3
replies
1.5k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi BiocManager
updated 2.3 years ago by 6.7k • written 2.3 years ago by • 0
0
votes
4
replies
1.1k
views
Error installing Bioc
clusterProfiler Bioconductor BiocManager
updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by • 0
0
votes
1
reply
4.5k
views
Cannot install package "clusterProfiler" by BiocManager::install()
clusterProfiler BiocManager
updated 2.4 years ago by 4.1k • written 2.4 years ago by • 0
4
votes
13
replies
4.8k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 2.1 years ago by ★ 5.2k • written 2.7 years ago by • 0
0
votes
1
reply
857
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
2
votes
1
reply
4.8k
views
Unable to install DESeq2, 'getOption("repos") replaces Bioconductor standard repositories, see '?repositories' for details
BiocManager
updated 2.7 years ago by 700 • written 2.7 years ago by ▴ 10
1
vote
5
replies
2.0k
views
EBImage installation problem
BiocManager
updated 2.8 years ago by 6.7k • written 2.8 years ago by • 0
0
votes
3
replies
4.3k
views
Problem with gcc/fortran compilers in new version of Bioconductor (Mac M1)
biocmanager R gofortran Bioconductor
2.8 years ago Olivia • 0
1
vote
6
replies
2.2k
views
Problems installing BiocManager
BiocManager
2.9 years ago ksci ▴ 20
0
votes
2
replies
2.6k
views
RNA-seq: problems with edgeR installation
BiocManager edgeR
updated 2.9 years ago by ★ 4.7k • written 2.9 years ago by • 0
0
votes
2
replies
1.7k
views
A mistake came when I install some packages using "biocmanager"
biocmanager
3.1 years ago f1014063507 • 0
0
votes
8
replies
11k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 15 months ago by 700 • written 3.6 years ago by ▴ 10
12
votes
33
replies
37k
views
Cannot install packages by BiocManager::install()
BiocManager
updated 2.8 years ago by 68k • written 3.8 years ago by ▴ 60
1
vote
2
replies
1.5k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
1
reply
1.5k
views
Cannot install anything through BiocManager::install()
BiocManager
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by • 0
6
votes
6
replies
7.4k
views
Avoid upgrading BiocManager to 1.30.13; fix proposed
BiocManager
updated 3.5 years ago by • 0 • written 3.8 years ago by 6.7k
0
votes
2
replies
1.1k
views
I cannot install the splatter on colab
splatter biocmanager
written 3.9 years ago by • 0
0
votes
1
reply
2.6k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 10
1
vote
3
replies
1.4k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
4.1 years ago adklts • 0
1
vote
21
replies
6.0k
views
Warning: unable to access index for repository https://bioconductor.org/packages/3.11/data/annotation/bin/macosx/contrib/4.0
BiocManager
written 4.8 years ago by ▴ 60
5
votes
6
replies
3.1k
views
Download errors during Bioconductor 3.12 update
reactome.db Bioconductor BiocManager
updated 4.3 years ago by 25k • written 4.3 years ago by ▴ 90
1
vote
6
replies
3.7k
views
installing bioconductor packages with DNS problem
bioconductor biocmanager installing packages dns
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
2
votes
3
replies
2.3k
views
Unable to install BiocManager
BiocManager
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.2k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
1
vote
3
replies
4.9k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
1
vote
5
replies
3.5k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
3
votes
4
replies
1.9k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.9 years ago dakarai_esgdaille ▴ 10
0
votes
1
reply
2.1k
views
I have installed "muscle", but package will not work
muscle BiocManager
updated 5.0 years ago by 4.1k • written 5.0 years ago by • 0
0
votes
3
replies
1.2k
views
Installation path not writable
ebimage biocmanager
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
0
votes
5
replies
2.2k
views
Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
5.3 years ago wang.lingjue • 0
1
vote
3
replies
2.3k
views
R 3.6.1: How to upgrade from existing Bioconductor 3.9 to 3.10?
upgrade BiocManager
updated 5.3 years ago by 25k • written 5.3 years ago by ★ 2.4k
0
votes
1
reply
2.6k
views
BiocManager upgrade problem
BiocManager
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
7
replies
3.8k
views
GenomicRanges requires S4Vectors 0.23.19 when 0.22.1 installs from BiocManager
S4Vectors GenomicRanges BiocManager
5.4 years ago james.dalgleish ▴ 30
0
votes
1
reply
1.1k
views
BiocManager::install() update change from biocLite()
BiocManager
5.4 years ago howarth.mailing.lists ▴ 10
0
votes
13
replies
3.1k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager Mac
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 30
4
votes
9
replies
2.8k
views
BiocManager v. 3.9 - where is it?
biocmanager
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 10
0
votes
4
replies
1.7k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 5.7 years ago by ★ 6.6k • written 5.7 years ago by • 0
0
votes
1
reply
2.9k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.7 years ago morlenrp • 0
6
votes
9
replies
2.9k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 90
9
votes
32
replies
7.7k
views
Rsamtools v 1.99.6 installation error
Rsamtools BiocManager R 3.6 ubuntu
updated 5.8 years ago by 16k • written 5.8 years ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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