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News: Community engagement and outreach award
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections
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4.6 years ago • updated 4.4 years ago shepherl 4.1k
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
conference bioc2020 talks News
4.4 years ago shepherl 4.1k
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News: Award Nomination Deadline Monday June 15th!
bioc2020 awards bioconductor recognition News
4.4 years ago shepherl 4.1k
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News: Scientific or Informatic Technology Advancement Award!
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4.4 years ago shepherl 4.1k
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News: Long-term contribution award
bioc2020 bioconductor lifetime recognition awards News
4.5 years ago shepherl 4.1k
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News: Documentation Bioconductor Award
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4.5 years ago shepherl 4.1k
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News: New Package Bioconductor Award
bioconductor bioc2020 award recognition News
4.5 years ago shepherl 4.1k
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News: Support Site Bioconductor Award
bioconductor bioc2020 awards recognition News
4.5 years ago shepherl 4.1k
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News: Bioc2020 - Virtual Conference Registration
bioc2020 conference registration News
4.5 years ago shepherl 4.1k
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News: Nominations for Bioconductor Awards!
Bioc2020 Bioconductor Awards Recognition News
4.6 years ago • updated 4.5 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
conference bioc2020 event deadline News
4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
bioc2020 event conference bioconductor News
4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor conference event bioc2020 News
4.7 years ago shepherl 4.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
bioconductor bioc2020 event conference News
4.8 years ago shepherl 4.1k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
conference bioconductor event bioc2020 News
4.8 years ago shepherl 4.1k
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News: Organizing Committee for BioC2020
conference committee Bioc2020 News
5.2 years ago shepherl 4.1k
17 results • Page 1 of 1
Recent ...
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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…
Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR by SamGG ▴ 350
Simply remove the cell type from the model. design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 880
You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal by maripane • 0
Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…
Votes
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
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Popular Question to Anna ▴ 20
Scholar to Haibo Liu ▴ 20
Popular Question to Talip ▴ 10
Popular Question to alexandre.blais ▴ 50
Popular Question to Fred Hutch (Recruiting) ▴ 40
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