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annotationtools
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2
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 6 months ago by
ATpoint
★ 4.2k • written 6 months ago by
yw24418
• 0
0
votes
1
reply
429
views
Which species does GO.db use
GO.db
annotationTools
updated 10 months ago by
Lluís Revilla Sancho
▴ 730 • written 10 months ago by
youngleel
• 0
0
votes
3
replies
782
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 20 months ago by
James W. MacDonald
66k • written 20 months ago by
jt.cathey
• 0
0
votes
0
replies
857
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.6 years ago
Shane
• 0
2
votes
10
replies
2.4k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.6 years ago by
Guido Hooiveld
★ 4.0k • written 2.7 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.4 years ago by
Mike Smith
★ 6.5k • written 3.4 years ago by
niyamurry
• 0
1
vote
3
replies
1.3k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.4 years ago by
James W. MacDonald
66k • written 6.4 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.6k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.8 years ago by
Brad Ander
▴ 20 • written 14.9 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 15.0 years ago by
Alexandre Kuhn
▴ 20 • written 15.0 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
1.0k
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.9 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
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Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Answer: GESA with certain gene list returns no result with human genom, but many result
by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
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Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
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