Showing : annotationtools • reset
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2
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645
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 13 months ago by ★ 4.6k • written 13 months ago by • 0
0
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1
reply
636
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Which species does GO.db use
GO.db annotationTools
updated 16 months ago by ▴ 760 • written 16 months ago by • 0
0
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3
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978
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
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0
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1.1k
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.1 years ago Shane • 0
2
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10
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2.9k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by • 0
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2
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1.3k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 3.9 years ago by ★ 6.6k • written 3.9 years ago by • 0
1
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3
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1.4k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 6.9 years ago by 67k • written 6.9 years ago by ▴ 70
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4
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1.8k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 15.4 years ago by ▴ 20 • written 15.4 years ago by ▴ 20
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1
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1.4k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 15.5 years ago by ▴ 20 • written 15.5 years ago by ▴ 50
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1.1k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
16.4 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0
Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …
Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k
Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…
Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10
Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…
Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k
I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…
Votes
Comment: Feature Counts - potential bug with outfile.jcounts
Answer: Feature Counts - potential bug with outfile.jcounts
Comment: Can we get beta values with DMRcate package
Answer: Can we get beta values with DMRcate package
DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)
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