Showing : annotationTools • reset
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2
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 16 months ago by ★ 4.8k • written 16 months ago by • 0
0
votes
1
reply
740
views
Which species does GO.db use
GO.db annotationTools
updated 20 months ago by ▴ 760 • written 20 months ago by • 0
0
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3
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1.1k
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.4 years ago Shane • 0
2
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10
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3.1k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by • 0
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2
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1.4k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 4.2 years ago by ★ 6.6k • written 4.2 years ago by • 0
1
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3
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1.5k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 7.2 years ago by 68k • written 7.2 years ago by ▴ 70
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4
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1.8k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 15.7 years ago by ▴ 20 • written 15.7 years ago by ▴ 20
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1
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1.4k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 15.8 years ago by ▴ 20 • written 15.8 years ago by ▴ 50
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0
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1.2k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
16.7 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
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