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Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.8 years ago by 52k • written 2.8 years ago by • 0
0
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1
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986
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.5 years ago by 52k • written 3.5 years ago by • 0
0
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7
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1.4k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
3.8 years ago AB • 0
3
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1
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1.0k
views
Create a '.db' package for agilent
R agilent microarray
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 20
6
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4
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4.4k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 30
1
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12
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3.1k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 6.3 years ago by 52k • written 6.3 years ago by ▴ 30
1
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2
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1.3k
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covert from RGList to uRNAList
agilent agimicrorna
updated 6.4 years ago by 52k • written 6.4 years ago by ▴ 30
1
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2
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1.3k
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 6.9 years ago by 52k • written 6.9 years ago by ▴ 10
3
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4
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1.5k
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Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 7.0 years ago by 52k • written 7.0 years ago by ▴ 10
1
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1
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1.3k
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Agilent Data Normalization Result
limma agilent arrayexpress
updated 7.1 years ago by 52k • written 7.1 years ago by • 0
2
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11
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2.6k
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Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
7.1 years ago CantExitVIM ▴ 10
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998
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Processing of agilent data
agilent
7.2 years ago Agaz Hussain Wani ▴ 260
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7
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2.4k
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Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 7.9 years ago by ★ 1.1k • written 7.9 years ago by ▴ 30
0
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1
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1.3k
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annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 8.2 years ago by 68k • written 8.3 years ago by ▴ 40
3
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4
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5.5k
views
LIMMA and Agilent single color
Annotation probe limma agilent
14.4 years ago • updated 8.3 years ago Gordon Smyth 52k
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2
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1.6k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 10
0
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9
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2.9k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
8.5 years ago Maximilian ▴ 10
3
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3
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4.8k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 9.2 years ago by 68k • written 9.2 years ago by ▴ 80
3
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9
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2.9k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.2 years ago Konstantinos Yeles ▴ 80
5
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10
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1.9k
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
9.2 years ago pm2015 • 0
1
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2
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1.6k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
2
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3
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1.6k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 9.4 years ago by 68k • written 9.4 years ago by ★ 4.1k
0
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2
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2.2k
views
Agilent Data Normalization Method
limma agilent
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
2
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1
reply
4.7k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
9.5 years ago Konstantinos Yeles ▴ 80
3
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9
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2.5k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 9.6 years ago by 52k • written 9.6 years ago by • 0
2
votes
5
replies
2.3k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 10
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2
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1.5k
views
microarray agilent data
microarray agilent limma
updated 9.8 years ago by ▴ 130 • written 9.8 years ago by • 0
1
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2
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2.5k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 9.8 years ago by 52k • written 9.8 years ago by • 0
0
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1
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1.4k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 9.8 years ago by ★ 1.1k • written 9.8 years ago by ▴ 320
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2
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2.9k
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which Agilent annotation db?
agilent annotation
9.9 years ago Frederico Moraes Ferreira ▴ 100
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3
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2.0k
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problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
10.2 years ago wd ▴ 30
0
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2
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1.7k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 10.2 years ago by 52k • written 17.1 years ago by ★ 1.1k
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1
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1.9k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 10.2 years ago by 52k • written 10.2 years ago by ▴ 150
1
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2
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2.3k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 10.3 years ago by 52k • written 10.3 years ago by ▴ 240
2
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2
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2.4k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 10.5 years ago by 52k • written 10.5 years ago by • 0
2
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4
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2.7k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 10.5 years ago by 52k • written 10.5 years ago by • 0
2
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4
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3.4k
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exporting limma log2 data
limma export log2 data agilent
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 110
37 results • Page 1 of 1
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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
Comment: RNA Seq using Lrt by Rob • 0
So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…
Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
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[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
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Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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