Showing : affylmgui • reset
2
votes
8
replies
839
views
AffylmGUI does not start wit R 4.4.1
affylmGUI
updated 3 months ago by 52k • written 3 months ago by ▴ 30
1
vote
6
replies
1.5k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 5.8 years ago by 52k • written 5.8 years ago by • 0
0
votes
2
replies
2.5k
views
How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 9.0 years ago by ▴ 370 • written 9.0 years ago by • 0
0
votes
3
replies
1.5k
views
affylmGUI affy affymetrix
affylmgui
updated 9.1 years ago by 52k • written 9.1 years ago by • 0
0
votes
4
replies
1.6k
views
Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 11.6 years ago by 67k • written 11.6 years ago by ▴ 170
0
votes
1
reply
1.1k
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 12.0 years ago by ▴ 450 • written 12.0 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 12.2 years ago by ★ 4.1k • written 12.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 12.3 years ago by 67k • written 12.3 years ago by ▴ 30
0
votes
8
replies
1.9k
views
affylmGUI/biocReposList() Problem
affylmGUI affylmGUI
updated 12.5 years ago by 67k • written 12.5 years ago by ▴ 30
0
votes
0
replies
1.2k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.7 years ago Manuela Di Russo ▴ 70
0
votes
2
replies
2.0k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 10
0
votes
4
replies
2.6k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ▴ 70
0
votes
0
replies
1.2k
views
TopTable function in affylmGUI does not have Gene names
affylmGUI affylmGUI
13.0 years ago Guest User ★ 13k
0
votes
2
replies
1.3k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 13.3 years ago by ★ 2.0k • written 13.3 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.1 years ago Lorenzo Melchor ▴ 50
0
votes
0
replies
975
views
[R] Problems in running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
14.1 years ago James W. MacDonald 67k
0
votes
8
replies
2.1k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 14.1 years ago by ▴ 500 • written 14.1 years ago by ▴ 200
0
votes
0
replies
1.1k
views
Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
14.4 years ago Lin Ying ▴ 10
0
votes
1
reply
1.1k
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 14.6 years ago by 67k • written 14.6 years ago by ★ 2.0k
0
votes
1
reply
1.0k
views
Unique CDF File
cdf affylmGUI cdf affylmGUI
updated 14.6 years ago by ★ 6.5k • written 14.6 years ago by ▴ 10
0
votes
0
replies
982
views
affylmGUI MA-plot using Gene Symbols
Microarray Annotation hgu133plus2 probe affy affylmGUI Microarray Annotation hgu133plus2
14.9 years ago Chuming Chen ▴ 140
0
votes
0
replies
969
views
Problems with Affylimma and AffylmGUI
cdf affylmGUI cdf affylmGUI
15.0 years ago Maxim ▴ 170
0
votes
0
replies
998
views
affylmGUI
affy affylmGUI affy affylmGUI
15.2 years ago A. de Lang ▴ 10
0
votes
0
replies
841
views
Expression values from gcRMA are different than before
gcrma affylmGUI gcrma affylmGUI
15.2 years ago Glyn Bradley ▴ 40
0
votes
0
replies
1.2k
views
Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
15.3 years ago rcaloger ▴ 500
0
votes
2
replies
1.4k
views
Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 10
0
votes
7
replies
2.0k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 10
0
votes
2
replies
1.2k
views
R scripts from AffylmGUI
Microarray affylmGUI Microarray affylmGUI
updated 15.4 years ago by ▴ 450 • written 15.4 years ago by ▴ 200
0
votes
0
replies
948
views
analyze/import my normalized/summarized affy data in affylmGUI
cdf affylmGUI cdf affylmGUI
15.6 years ago shirley zhang ★ 1.0k
0
votes
4
replies
1.5k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.7 years ago by ▴ 500 • written 15.7 years ago by ▴ 10
0
votes
1
reply
882
views
Please add hugene10stv1.cdf
cdf limma affylmGUI cdf limma affylmGUI
updated 15.8 years ago by 67k • written 15.8 years ago by ▴ 10
0
votes
8
replies
1.7k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 70
0
votes
18
replies
2.8k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 16.1 years ago by ▴ 70 • written 16.1 years ago by ★ 13k
0
votes
6
replies
2.5k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 16.4 years ago by ▴ 10 • written 16.4 years ago by ▴ 50
0
votes
2
replies
1.6k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 16.4 years ago by ▴ 90 • written 16.4 years ago by ▴ 140
0
votes
0
replies
1.1k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI
16.4 years ago Martin Morgan 25k
0
votes
0
replies
1.7k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
16.5 years ago Mark Cowley ▴ 400
0
votes
3
replies
3.6k
views
Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 16.5 years ago by ▴ 400 • written 16.5 years ago by ▴ 80
0
votes
1
reply
1.1k
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 16.5 years ago by 67k • written 16.5 years ago by ▴ 80
0
votes
1
reply
1.0k
views
default fdr rate in limma/affylmgui
affylmGUI affylmGUI
updated 16.7 years ago by 67k • written 16.7 years ago by ▴ 420
0
votes
0
replies
936
views
custom affylmGUI menus
Normalization vsn affylmGUI Normalization vsn affylmGUI
17.1 years ago Stefanie De Bodt ▴ 10
0
votes
3
replies
1.3k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 17.2 years ago by 25k • written 17.2 years ago by ★ 2.0k
0
votes
0
replies
847
views
affylmGUI: options for 'Export HTML Report'?
PROcess affylmGUI PROcess affylmGUI
17.3 years ago Keith Satterley ▴ 450
0
votes
1
reply
1.3k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 17.4 years ago by ▴ 450 • written 17.4 years ago by ▴ 450
0
votes
0
replies
693
views
affylmGUI 1.10.4 fixes 3 errors in Bioconductor release version
affylmGUI affylmGUI
17.5 years ago Keith Satterley ▴ 450
0
votes
3
replies
1.5k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 450
0
votes
0
replies
857
views
affylmGUI ver 1.10.2 bug fix in release branch
affylmGUI affylmGUI
17.6 years ago Keith Satterley ▴ 450
0
votes
0
replies
3.0k
views
Tcl/TK package "Bwidget" when using limmaGUI or affylmGUI
limmaGUI affylmGUI
updated 3 months ago by 52k • written 17.7 years ago by ▴ 450
0
votes
5
replies
1.4k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 17.7 years ago by ★ 6.5k • written 17.7 years ago by ▴ 830
50 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
Australia, 14 minutes ago
The city by the bay, 28 minutes ago
United States, 1 hour ago
Germany, 1 hour ago
WEHI, Melbourne, Australia, 3 hours ago
Traffic: 517 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6