Bioconductor Affy package

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microarray affy rma normalization affy package

5.7 years ago yshuang • 0

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affy package boxplot hgu133plus2 oligo package

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by Javier Pérez Florido ▴ 840

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Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

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Answer: BiocParallel_1.40.1.tar.gz not available

Comment: BiocParallel_1.40.1.tar.gz not available

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