Bioconductor Uniprot

Showing : Uniprot • reset

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ID Uniprot EntrezID

2.6 years ago tom.kloter • 0

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clusterProfiler AnnotationHub GO uniprot

updated 11 months ago by Guido Hooiveld ★ 4.1k • written 3.9 years ago by Alberto • 0

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UniProt.ws UniProt

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by JavierM • 0

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Uniprot Annotation Identifiers

5.7 years ago Juliet Hannah ▴ 360

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drawProteins uniprot

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by mblango • 0

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uniprot.ws uniprot uniprot accessions

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by balin • 0

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biomart r getbm uniprot

6.9 years ago lluex.rova • 0

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uniprot.ws uniprot

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by l.nilse • 0

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Annotation mouse UNIPROT

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.3 years ago by julie.chevalier • 0

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uniprot.ws UniProt annotation

8.1 years ago l.nilse • 0

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nimblegen Biomart Uniprot

updated 8.1 years ago by Gordon Smyth 52k • written 8.1 years ago by theobroma22 ▴ 10

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uniprot uniprot.ws

8.8 years ago Dario Strbenac ★ 1.5k

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uniprot.ws subcellular location uniprot

8.9 years ago DHS • 0

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uniprot.ws uniprot

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by cerikahp • 0

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uniprot.ws uniprot uniprot accessions software error

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by john ▴ 10

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biomart uniprot unimart

9.1 years ago john ▴ 10

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uniprot.ws uniprot

updated 9.9 years ago by Marc Carlson ★ 7.2k • written 9.9 years ago by Guido Hooiveld ★ 4.1k

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uniprot.ws uniprot ensembl

updated 10.0 years ago by Marc Carlson ★ 7.2k • written 10.0 years ago by Joseph Barry ▴ 160

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biomaRt uniprot ensembl

updated 10.1 years ago by me • 0 • written 10.1 years ago by António Miguel de Jesus Domingues ▴ 510

19 results • Page 1 of 1

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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Votes

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

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