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UniProt
•
reset
2
votes
5
replies
4.2k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
2.5 years ago
tom.kloter
• 0
3
votes
11
replies
6.0k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler
AnnotationHub
GO
uniprot
updated 9 months ago by
Guido Hooiveld
★ 4.1k • written 3.8 years ago by
Alberto
• 0
1
vote
1
reply
1.2k
views
UniProt.ws - Speeding up select() for data retrieval
UniProt.ws
UniProt
updated 4.0 years ago by
James W. MacDonald
67k • written 4.0 years ago by
JavierM
• 0
2
votes
3
replies
1.2k
views
Uniprot and UniProt.ws
Uniprot
Annotation
Identifiers
5.6 years ago
Juliet Hannah
▴ 360
4
votes
2
replies
1.0k
views
drawProteins from Uniprot entry (missing chain information)
drawProteins
uniprot
updated 5.8 years ago by
James W. MacDonald
67k • written 5.8 years ago by
mblango
• 0
1
vote
4
replies
1.4k
views
UniProt.ws non-functional or abandoned?
uniprot.ws
uniprot
uniprot accessions
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
balin
• 0
0
votes
2
replies
1.3k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
6.8 years ago
lluex.rova
• 0
0
votes
1
reply
1.3k
views
UniProt.ws - single database for two species
uniprot.ws
uniprot
updated 7.1 years ago by
James W. MacDonald
67k • written 7.1 years ago by
l.nilse
• 0
0
votes
1
reply
1.9k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
julie.chevalier
• 0
1
vote
7
replies
2.3k
views
UniProt.ws report 1:many mappings in a single row
uniprot.ws
UniProt
annotation
8.0 years ago
l.nilse
• 0
0
votes
3
replies
1.3k
views
Accessing feature data of a Malus domestica Nimblegen microarray
nimblegen
Biomart
Uniprot
updated 8.0 years ago by
Gordon Smyth
51k • written 8.0 years ago by
theobroma22
▴ 10
4
votes
1
reply
1.8k
views
Converting Protein Accessions Into Protein Symbols
uniprot
uniprot.ws
8.7 years ago
Dario Strbenac
★ 1.5k
2
votes
4
replies
3.2k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
8.8 years ago
DHS
• 0
0
votes
3
replies
1.6k
views
Anotations Score of uniprot. ws
uniprot.ws
uniprot
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
cerikahp
• 0
2
votes
2
replies
1.5k
views
Is there a package that has Uniprot protein descriptions?
uniprot.ws
uniprot
uniprot accessions
software error
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
john
▴ 10
2
votes
14
replies
4.2k
views
Unimart not available in 2015?
biomart
uniprot
unimart
9.0 years ago
john
▴ 10
1
vote
4
replies
4.2k
views
problem with retrieving UniProt annotation data
uniprot.ws
uniprot
updated 9.7 years ago by
Marc Carlson
★ 7.2k • written 9.8 years ago by
Guido Hooiveld
★ 4.1k
0
votes
6
replies
2.6k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws
uniprot
ensembl
updated 9.9 years ago by
Marc Carlson
★ 7.2k • written 9.9 years ago by
Joseph Barry
▴ 160
0
votes
2
replies
1.6k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt
uniprot
ensembl
updated 10.0 years ago by
me
• 0 • written 10.0 years ago by
António Miguel de Jesus Domingues
▴ 510
19 results • Page
1 of 1
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Comment: Deseq2 res Function
by
James W. MacDonald
67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data
by
James W. MacDonald
67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Robert Castelo
★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Votes
Appropriate use of the function treat of the limma package
Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
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