Bioconductor TxDb.Hsapiens.UCSC.hg38.knownGene

Showing : TxDb.Hsapiens.UCSC.hg38.knownGene • reset

votes

151

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 12 weeks ago by James W. MacDonald 68k • written 12 weeks ago by linouhao ▴ 20

votes

replies

2.4k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.1 years ago davidhillis • 0

votes

replies

1.0k

views

microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

2.2 years ago Lluís Revilla Sancho ▴ 760

votes

4.7k

views

install TxDb.Hsapiens.UCSC.hg38.knownGene

3.1 years ago Theresa ▴ 20

votes

replies

1.8k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.3 years ago by Hervé Pagès 16k • written 3.3 years ago by BioEpi • 0

votes

2.3k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by lukijanczukpawel • 0

votes

replies

1.4k

views

annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.2 years ago by kayla.interdonato ▴ 160 • written 5.2 years ago by jam526 • 0

votes

replies

1.4k

views

TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.2 years ago by shepherl 4.1k • written 5.2 years ago by bernatgel ▴ 150

votes

1.1k

views

HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.2 years ago by kayla.interdonato ▴ 160 • written 5.2 years ago by Kamil Slowikowski ▴ 30

votes

replies

3.6k

views

TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by Aditya ▴ 160

votes

replies

2.6k

views

TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.9 years ago Ruichao.Zeng ▴ 20

vote

replies

3.6k

views

txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.3 years ago by Simon Anders ★ 3.8k • written 7.3 years ago by Mark Dunning ★ 1.1k

vote

replies

1.8k

views

s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

7.5 years ago Leonardo Collado Torres ★ 1.1k

votes

replies

3.1k

views

annotation txdb.hsapiens.ucsc.hg38.knowngene bug

8.5 years ago shilin.zhao ▴ 40

votes

replies

4.0k

views

txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

9.0 years ago enricoferrero ▴ 680

15 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Votes

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All