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News:
Bioconductor Course, Kenya 2025: Applications Open!
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Bioconductor
19 days ago
Maria Doyle
▴ 100
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840
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor
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21 months ago
Maria Doyle
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758
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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Bioconductor
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Tutorial
22 months ago
Maria Doyle
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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Bioconductor
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22 months ago
Maria Doyle
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News:
BioCAsia, 5-6th December 2019, Sydney, Australia
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5.7 years ago
Peter Hickey
▴ 750
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News:
BioCAsia, 29-30th November 2018, Melbourne, Australia
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News
updated 6.2 years ago by
Gordon Smyth
52k • written 6.5 years ago by
Steve Pederson
▴ 170
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News:
LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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proteomics
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msstats
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7.1 years ago
mnchoi67
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News:
May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor
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proteomics
News
7.1 years ago
mnchoi67
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3
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Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.0 years ago
Martin Morgan
25k
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Help with neuroblastoma working group
Training
updated 9.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.5 years ago by
paul.mineau
▴ 10
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Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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10.0 years ago
Wolfgang Huber
★ 13k
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NGS data analysis training courses at EMBL-EBI
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10.1 years ago
gr231
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3
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Beginner's guide to DESeq2 pdf link broken
deseq2
training
updated 10.3 years ago by
Michael Love
43k • written 10.3 years ago by
sunshinne
• 0
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News:
Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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10.4 years ago
Thomas Girke
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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