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ToPASeq
•
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0
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replies
906
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Running deprecated packages
ToPASeq
Deprecation
2.6 years ago
pgauthi1
• 0
0
votes
1
reply
838
views
SPIA function error in ToPASeq
topaseq
updated 6.4 years ago by
Gordon Smyth
51k • written 6.4 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.1k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.6 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.1k
views
Problem in ToPASeq installation
topaseq
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.8 years ago
jan.soderman
• 0
0
votes
1
reply
987
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.9 years ago by
theobroma22
▴ 10 • written 7.9 years ago by
rubi
▴ 110
1
vote
2
replies
1.5k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.5 years ago
saamar.rajput
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: Appropriate ways to filter counts data for voom/limma
by
dorothylminter
• 0
The proper way to filter count data for voom/limma emphasizes the importance of choosing the right filtering technique to enhance detection…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Comment: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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Robert Castelo
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Michael Stadler
▴ 350
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ATpoint
★ 4.5k
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James W. MacDonald
67k
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Stefano Mangiola
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