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ToPASeq
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1.0k
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Running deprecated packages
ToPASeq
Deprecation
2.9 years ago
pgauthi1
• 0
0
votes
1
reply
914
views
SPIA function error in ToPASeq
topaseq
updated 6.8 years ago by
Gordon Smyth
52k • written 6.8 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.2k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
7.0 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.2k
views
Problem in ToPASeq installation
topaseq
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
8.2 years ago
jan.soderman
• 0
0
votes
1
reply
1.1k
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 8.2 years ago by
theobroma22
▴ 10 • written 8.3 years ago by
rubi
▴ 110
1
vote
2
replies
1.6k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.9 years ago
saamar.rajput
• 0
7 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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