Showing : Svaseq • reset
2
votes
2
replies
488
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Double normalising when using sva and deseq2
DESeq2 Normalisation Bulkrnaseq Svaseq
6 months ago BioinfGuru ▴ 70
0
votes
1
reply
852
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how to identify the unwanted variables independent of phenotypes
RUVSeq svaseq
2.5 years ago Tongjun • 0
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0
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1.3k
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SVA method for estimating surrogate variables of RNA Seq
RNASeq sva svaseq
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
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0
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982
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SVAseq for differential transcript usage and differential splicing analysis
limma sva Leafcutter SVAseq
3.2 years ago georgia.katsoula ▴ 40
0
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1
reply
958
views
SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.7 years ago by 67k • written 4.7 years ago by ▴ 30
1
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1
reply
1.1k
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svaseq - over adjustment
svaseq sva
5.8 years ago flippy23 • 0
1
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1
reply
1.0k
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sva correction for MEDIPS
MEDIPS svaseq sva
updated 5.9 years ago by ▴ 570 • written 5.9 years ago by • 0
2
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3
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1.9k
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Batch-effect: batch in design and corrected batch with sva- DESeq2
deseq2 svaseq
5.9 years ago bioinfo • 0
3
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4
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1.8k
views
Calling svaseq() multiple times
edger sva svaseq limma
updated 6.6 years ago by ★ 7.9k • written 6.6 years ago by ▴ 20
1
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2
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3.6k
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Applying SVA to RNA-Seq dataset
DESeq2 sva svaseq batch effect correction
6.9 years ago L_K • 0
0
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0
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1.3k
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correlated known batch effect correction using svaseq
svaseq batcheffectcorrection
7.1 years ago burcu.atasu • 0
1
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1
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1.7k
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Outputting batch-effect free normalized counts
ruvseq svaseq edaseq
updated 7.1 years ago by ▴ 980 • written 7.1 years ago by ▴ 10
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0
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1.4k
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Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
7.4 years ago vedran.franke • 0
1
vote
6
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1.9k
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RNASeq fold change analysis after subtraction of contaminating MEF signal
deseq2 svaseq
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 10
3
votes
4
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2.0k
views
Taking surrogate variable into account before running PCA
sva svaseq
updated 7.5 years ago by ★ 4.1k • written 7.5 years ago by • 0
3
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2
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2.7k
views
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 670
2
votes
7
replies
2.0k
views
Is possible to apply 'svaseq' with 'DEXSeq' design in order to remove unknown batch effects ?
svaseq dexseq
updated 7.9 years ago by ★ 1.9k • written 7.9 years ago by • 0
3
votes
6
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2.8k
views
is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 8.2 years ago by ▴ 50 • written 8.2 years ago by ▴ 10
5
votes
7
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5.8k
views
Correcting for known and surrogate variables in DESeq2
deseq2 svaseq
8.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
2
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1
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2.0k
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Regarding batch effect in Deseq2 package
deseq2 sva svaseq
updated 8.3 years ago by 43k • written 8.3 years ago by ▴ 20
0
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3
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2.8k
views
can we use sva function to estimate artifacts for rna seq data?
sva svaseq batcheffectcorrection
updated 8.4 years ago by ▴ 650 • written 8.4 years ago by ▴ 20
1
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5
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4.0k
views
PCA of svaseq "cleaned" counts and DESeq2 SV subtracted counts are different?
deseq2 sva svaseq pca
8.5 years ago Peter Alto ▴ 10
22 results • Page 1 of 1
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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