Bioconductor Svaseq

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600

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DESeq2 Normalisation Bulkrnaseq Svaseq

8 months ago BioinfGuru ▴ 70

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899

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RUVSeq svaseq

2.6 years ago Tongjun • 0

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1.3k

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RNASeq sva svaseq

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Bex • 0

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limma sva Leafcutter SVAseq

3.4 years ago georgia.katsoula ▴ 40

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sva svaseq surrogate variable analysis

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by Mozart ▴ 30

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svaseq sva

5.9 years ago flippy23 • 0

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MEDIPS svaseq sva

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by tofukaj • 0

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deseq2 svaseq

6.1 years ago bioinfo • 0

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1.9k

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edger sva svaseq limma

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by cats_dogs ▴ 20

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DESeq2 sva svaseq batch effect correction

7.1 years ago L_K • 0

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1.3k

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svaseq batcheffectcorrection

7.3 years ago burcu.atasu • 0

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1.8k

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ruvseq svaseq edaseq

updated 7.3 years ago by davide risso ▴ 980 • written 7.3 years ago by llo ▴ 10

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sva svaseq batch effect batch effects batch effect correction

7.5 years ago vedran.franke • 0

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deseq2 svaseq

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by gpalidwor ▴ 10

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sva svaseq

updated 7.7 years ago by Guido Hooiveld ★ 4.1k • written 7.7 years ago by wamiqsaifi • 0

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2.8k

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limma sva svaseq

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Bogdan ▴ 670

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svaseq dexseq

updated 8.1 years ago by Alejandro Reyes ★ 1.9k • written 8.1 years ago by tofukaj • 0

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2.9k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.4 years ago by Jakub ▴ 50 • written 8.4 years ago by amoltej ▴ 10

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deseq2 svaseq

8.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.1k

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deseq2 sva svaseq

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by szenitha ▴ 20

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2.9k

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sva svaseq batcheffectcorrection

updated 8.6 years ago by Jeff Leek ▴ 650 • written 8.6 years ago by szenitha ▴ 20

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4.1k

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deseq2 sva svaseq pca

8.7 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

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Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This post does not fit the theme of this forum.

Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0

Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k