Bioconductor Svaseq

Showing : Svaseq • reset

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172

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DESeq2 Normalisation Bulkrnaseq Svaseq

23 days ago BioinfGuru ▴ 30

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702

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RUVSeq svaseq

24 months ago • updated 23 months ago Tongjun • 0

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1.1k

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RNASeq sva svaseq

updated 2.5 years ago by James W. MacDonald 66k • written 2.5 years ago by Bex • 0

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826

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limma sva Leafcutter SVAseq

2.8 years ago georgia.katsoula ▴ 40

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812

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sva svaseq surrogate variable analysis

updated 4.2 years ago by James W. MacDonald 66k • written 4.2 years ago by Mozart ▴ 30

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955

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svaseq sva

5.3 years ago flippy23 • 0

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913

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MEDIPS svaseq sva

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by tofukaj • 0

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1.6k

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deseq2 svaseq

5.4 years ago bioinfo • 0

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1.5k

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edger sva svaseq limma

updated 6.1 years ago by Ryan C. Thompson ★ 7.9k • written 6.1 years ago by cats_dogs ▴ 20

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3.3k

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DESeq2 sva svaseq batch effect correction

6.4 years ago L_K • 0

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1.1k

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svaseq batcheffectcorrection

6.7 years ago burcu.atasu • 0

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1.5k

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ruvseq svaseq edaseq

updated 6.7 years ago by davide risso ▴ 950 • written 6.7 years ago by llo ▴ 10

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1.3k

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sva svaseq batch effect batch effects batch effect correction

6.9 years ago vedran.franke • 0

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1.8k

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deseq2 svaseq

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by gpalidwor ▴ 10

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1.8k

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sva svaseq

updated 7.1 years ago by Guido Hooiveld ★ 4.0k • written 7.1 years ago by wamiqsaifi • 0

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2.6k

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limma sva svaseq

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by Bogdan ▴ 670

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1.8k

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svaseq dexseq

updated 7.4 years ago by Alejandro Reyes ★ 1.9k • written 7.4 years ago by tofukaj • 0

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2.4k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.7 years ago by Jakub ▴ 50 • written 7.7 years ago by amoltej ▴ 10

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5.4k

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deseq2 svaseq

7.7 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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1.7k

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deseq2 sva svaseq

updated 7.9 years ago by Michael Love 42k • written 7.9 years ago by szenitha ▴ 20

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2.5k

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sva svaseq batcheffectcorrection

updated 7.9 years ago by Jeff Leek ▴ 650 • written 7.9 years ago by szenitha ▴ 20

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3.8k

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deseq2 sva svaseq pca

8.1 years ago Peter Alto ▴ 10

22 results • Page 1 of 1

Recent ...

Replies

Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

Votes

Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10