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News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
15 months ago
shepherl
4.1k
0
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0
replies
1.0k
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News:
New Package Submission Deadline for Bioc Release 3.14
newpackage
Deadline
Release
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3.6 years ago
shepherl
4.1k
0
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2
replies
1.2k
views
Confusion error from automated checks for package submission
package
submiss
Submission
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
sara.stankiewicz
• 0
1
vote
1
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1.2k
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Recommended logging/logger for bioconductor package submission.
Submission
updated 4.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 4.0 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.3k
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News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
4.0 years ago
shepherl
4.1k
1
vote
0
replies
1.3k
views
News:
New Package Submission Deadline for Bioc Release 3.12
release
new package
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News
4.6 years ago
shepherl
4.1k
0
votes
3
replies
1.5k
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News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 3.8 years ago by
jonathan.dekermanjian
• 0 • written 4.8 years ago by
shepherl
4.1k
2
votes
2
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1.1k
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Does the 10 minute CMD check time limit include unit testing?
new package
submission
5.4 years ago
Krutik Patel
▴ 10
0
votes
0
replies
811
views
News:
Single Package Builder for New Package Submissions
new package
submission
release
News
5.4 years ago
shepherl
4.1k
1
vote
1
reply
932
views
Is ECIS Data within BioConductor's remit?
Submission
ECIS
Bioconductor Scope
updated 5.6 years ago by
Martin Morgan
25k • written 5.6 years ago by
jhuc964
▴ 10
0
votes
1
reply
1.5k
views
How to submit a package hosted on Bitbucket
package
submission
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
richierocks
▴ 40
1
vote
0
replies
4.4k
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News:
New Package Submission Process
submission
News
8.9 years ago
Dan Tenenbaum
★ 8.2k
7
votes
6
replies
2.4k
views
Help to find Volunteer who can review my bioconductor package before submission ?
r packages
submission
9.2 years ago
Jurat Shahidin
▴ 80
13
votes
1
reply
3.2k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
9.3 years ago
Martin Morgan
25k
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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