Showing : Statistics • reset
0
votes
0
replies
497
views
Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
11 months ago Andy Lynch ▴ 120
0
votes
0
replies
496
views
multipollutant models
statistics Regression r limma
14 months ago Jitendra ▴ 10
0
votes
1
reply
587
views
DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 14 months ago by 43k • written 14 months ago by • 0
1
vote
1
reply
569
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 16 months ago by 67k • written 16 months ago by ▴ 10
1
vote
1
reply
2.5k
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 21 months ago by ★ 4.6k • written 21 months ago by ▴ 10
0
votes
3
replies
1.6k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 10
0
votes
0
replies
858
views
Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
2.1 years ago alena.vanboemmel • 0
0
votes
2
replies
1.0k
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.1 years ago by ★ 1.4k • written 2.1 years ago by • 0
1
vote
0
replies
900
views
Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
2.5 years ago arisarkar88 ▴ 40
1
vote
0
replies
983
views
Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.5 years ago Andy Lynch ▴ 120
1
vote
0
replies
1.0k
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.5 years ago Andy Lynch ▴ 120
0
votes
6
replies
1.7k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.7 years ago Jitendra ▴ 10
0
votes
3
replies
1.8k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.9 years ago by 21k • written 3.0 years ago by ▴ 10
3
votes
5
replies
1.6k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 4.0 years ago by • 0
0
votes
2
replies
1.3k
views
News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.3 years ago • updated 2.0 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.3k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.8 years ago • updated 3.7 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.1k
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.9 years ago m.jackson • 0
0
votes
0
replies
1.1k
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.0 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
1.3k
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.1 years ago Laura • 0
0
votes
0
replies
1.1k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.2 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
1.4k
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 60
2
votes
0
replies
1.1k
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
4.4 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
927
views
Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.5 years ago • updated 4.2 years ago whduke • 0
0
votes
0
replies
2.1k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.6 years ago • updated 4.2 years ago Luo Weijun ★ 1.6k
1
vote
0
replies
1.1k
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
3
votes
0
replies
2.5k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.2 years ago • updated 5.1 years ago Gordon Smyth 52k
0
votes
0
replies
1.5k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
6.0 years ago • updated 5.2 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
1.0k
views
How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.2 years ago A • 0
0
votes
1
reply
949
views
Exclude interaction terms from the design
deseq2 statistics modelling
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
2
votes
2
replies
3.8k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.3 years ago by 52k • written 5.3 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
5.4 years ago tatabox • 0
3
votes
3
replies
1.8k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
0
votes
1
reply
1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.0 years ago naglemi ▴ 10
0
votes
0
replies
951
views
package for mismatch distribution?
genetics statistics
6.0 years ago myriam.croze07 • 0
1
vote
6
replies
3.2k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 23 months ago by 43k • written 6.1 years ago by • 0
1
vote
2
replies
1.1k
views
Newbie to all of this
bioconductor statistics
6.3 years ago sportwoo • 0
8
votes
8
replies
7.9k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.4 years ago by ★ 7.9k • written 6.4 years ago by ▴ 60
1
vote
2
replies
1.2k
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
1
vote
4
replies
1.5k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
6.4 years ago Andrea Carenzo • 0
0
votes
2
replies
1.3k
views
comparing two GOstats result lists
gostats statistics
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 30
1
vote
0
replies
1.4k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.7 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
1.4k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.8 years ago floriandeckert ▴ 30
0
votes
0
replies
1.3k
views
News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.8 years ago kieranrcampbell ▴ 50
0
votes
0
replies
1.4k
views
Two questions about pathifier package
pathways statistics microarray
7.1 years ago arronar • 0
27
votes
7
replies
12k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 16 months ago by ▴ 10 • written 7.3 years ago by ▴ 40
2
votes
4
replies
1.4k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 90
0
votes
0
replies
1.4k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.3 years ago rbronste ▴ 60
0
votes
0
replies
1.8k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.0 years ago • updated 7.8 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
2.3k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.9 years ago by • 0 • written 9.9 years ago by ▴ 80
0
votes
0
replies
1.4k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
7.9 years ago radel • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…
Votes
Bioconductor Course, Kenya 2025: Applications Open!
Comment: can't install tscR
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Awards • All
Popular Question to Maria Doyle ▴ 100
Popular Question to Robert Ivanek ▴ 750
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to Koen Van den Berge ▴ 180
Locations • All
WEHI, Melbourne, Australia, 3 minutes ago
United States, 22 minutes ago
United States, 30 minutes ago
Pittsburgh, United States, 39 minutes ago
United States, 44 minutes ago
Traffic: 744 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6