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Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
12 months ago Andy Lynch ▴ 120
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516
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multipollutant models
statistics Regression r limma
15 months ago Jitendra ▴ 10
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1
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635
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 15 months ago by 43k • written 15 months ago by • 0
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593
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Further analysis after limma regression output
statistics Epigenetics limma
updated 17 months ago by 68k • written 17 months ago by ▴ 10
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 22 months ago by ★ 4.7k • written 22 months ago by ▴ 10
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3
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1.7k
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batch effect in EPIC array data
statistics Epigenetics R
updated 2.0 years ago by ▴ 760 • written 2.0 years ago by ▴ 10
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896
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
2.1 years ago alena.vanboemmel • 0
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.2 years ago by ★ 1.4k • written 2.2 years ago by • 0
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
2.6 years ago arisarkar88 ▴ 40
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1.0k
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.6 years ago Andy Lynch ▴ 120
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1.1k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.6 years ago Andy Lynch ▴ 120
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6
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1.7k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.8 years ago Jitendra ▴ 10
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3
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1.9k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 3.0 years ago by 21k • written 3.1 years ago by ▴ 10
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5
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1.6k
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P adjusted values in Deseq2
DESeq2 Statistics
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1.3k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.4 years ago • updated 2.1 years ago Wolfgang Huber ★ 13k
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1.3k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.9 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
4.0 years ago m.jackson • 0
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.1 years ago António Miguel de Jesus Domingues ▴ 510
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.2 years ago Laura • 0
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1.1k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.3 years ago • updated 3.9 years ago Luo Weijun ★ 1.6k
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1.5k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 60
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1.1k
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
4.4 years ago Johannes Rainer ★ 2.1k
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.6 years ago • updated 4.3 years ago whduke • 0
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2.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.7 years ago • updated 4.3 years ago Luo Weijun ★ 1.6k
1
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1.2k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.8 years ago Fred Hutch (Recruiting) ▴ 40
3
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2.5k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.3 years ago • updated 5.2 years ago Gordon Smyth 52k
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
6.1 years ago • updated 5.2 years ago Luo Weijun ★ 1.6k
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1.0k
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.3 years ago A • 0
0
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1
reply
984
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
2
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2
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3.9k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.4 years ago by 52k • written 5.4 years ago by ▴ 10
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1.3k
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
5.5 years ago tatabox • 0
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3
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1.8k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
0
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1.2k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.1 years ago naglemi ▴ 10
0
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0
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984
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package for mismatch distribution?
genetics statistics
6.1 years ago myriam.croze07 • 0
1
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6
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3.3k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 2.0 years ago by 43k • written 6.2 years ago by • 0
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2
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1.2k
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Newbie to all of this
bioconductor statistics
6.4 years ago sportwoo • 0
8
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8
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8.1k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.4 years ago by ★ 7.9k • written 6.4 years ago by ▴ 60
1
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2
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1.2k
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
1
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4
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1.5k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
6.5 years ago Andrea Carenzo • 0
0
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2
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1.4k
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comparing two GOstats result lists
gostats statistics
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 30
1
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0
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1.4k
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.8 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.4k
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.9 years ago floriandeckert ▴ 30
0
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0
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1.4k
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.9 years ago kieranrcampbell ▴ 50
0
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0
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1.4k
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Two questions about pathifier package
pathways statistics microarray
7.1 years ago arronar • 0
28
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7
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12k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 17 months ago by ▴ 10 • written 7.4 years ago by ▴ 40
2
votes
4
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1.5k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.4 years ago by ★ 13k • written 7.4 years ago by ▴ 90
0
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0
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1.4k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.4 years ago rbronste ▴ 60
0
votes
0
replies
1.8k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.1 years ago • updated 7.9 years ago Luo Weijun ★ 1.6k
1
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2
replies
2.3k
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how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 8.0 years ago by • 0 • written 10.0 years ago by ▴ 80
0
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0
replies
1.5k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
8.0 years ago radel • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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