Showing : StatisticalMethod • reset
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
28 days ago user_bioinfo • 0
1
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2
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306
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 5 months ago by • 0
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470
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 10 months ago by ★ 1.4k • written 10 months ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
11 months ago pierre.devillemereuil • 0
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 11 months ago by ★ 4.8k • written 11 months ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
15 months ago Linton • 0
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
16 months ago Sabiha ▴ 20
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2
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854
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
17 months ago Manthos • 0
5
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2
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1.8k
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 18 months ago by 52k • written 18 months ago by ▴ 10
3
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993
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 22 months ago by 52k • written 22 months ago by ▴ 30
2
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3
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3.2k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by ▴ 10
2
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4
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1.1k
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.2 years ago Loïc • 0
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1.2k
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.2 years ago rcreswell01 • 0
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1.4k
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.2 years ago by 52k • written 2.2 years ago by ▴ 10
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734
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.4 years ago by 43k • written 2.5 years ago by ▴ 10
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857
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.5 years ago Laurent Gatto 1.6k
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1.5k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.6 years ago walkerrh95 • 0
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1.2k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.6 years ago gaow • 0
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757
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.1 years ago dong ▴ 10
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3
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5.5k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.0 years ago by • 0 • written 3.2 years ago by • 0
6
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4
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1.3k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.3 years ago Giovanni • 0
2
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7
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1.9k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.6 years ago Field -Ye • 0
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2.0k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.8 years ago Aneesha • 0
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1
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1.0k
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
6
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6
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2.2k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.1 years ago by 52k • written 4.1 years ago by ▴ 10
1
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3
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1.5k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.3 years ago jol.espinoz ▴ 40
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2
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942
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
28 results • Page 1 of 1
Recent ...
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Comment: How to convert transcript counts to gene counts in R? by ben • 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open! by Ali • 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets by Gordon Smyth 52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20
Thank you very much for the vis suggestion!
Votes
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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