Showing : StatisticalMethod • reset
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 3 months ago by • 0
0
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403
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 8 months ago by ★ 1.4k • written 8 months ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
9 months ago pierre.devillemereuil • 0
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3
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 9 months ago by ★ 4.7k • written 9 months ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
13 months ago Linton • 0
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2
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
14 months ago Sabiha ▴ 20
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
15 months ago Manthos • 0
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 16 months ago by 52k • written 16 months ago by ▴ 10
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943
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 20 months ago by 52k • written 20 months ago by ▴ 30
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3
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 23 months ago by ★ 4.7k • written 23 months ago by ▴ 10
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.0 years ago • updated 24 months ago Loïc • 0
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.0 years ago rcreswell01 • 0
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.1 years ago by 52k • written 2.1 years ago by ▴ 10
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.2 years ago by 43k • written 2.3 years ago by ▴ 10
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.3 years ago Laurent Gatto 1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.4 years ago walkerrh95 • 0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.4 years ago gaow • 0
0
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0
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726
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.9 years ago dong ▴ 10
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3
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5.1k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.8 years ago by • 0 • written 3.1 years ago by • 0
6
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4
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1.3k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.1 years ago Giovanni • 0
2
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7
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1.9k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.4 years ago Field -Ye • 0
0
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1.8k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.7 years ago Aneesha • 0
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.8 years ago by 43k • written 3.8 years ago by • 0
6
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6
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2.1k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.9 years ago by 52k • written 4.0 years ago by ▴ 10
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3
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1.4k
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.1 years ago jol.espinoz ▴ 40
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898
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
27 results • Page 1 of 1
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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA by pammelala304 • 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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