Showing : StatisticalMethod • reset
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 5 months ago by ★ 1.4k • written 5 months ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
6 months ago pierre.devillemereuil • 0
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3
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732
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 6 months ago by ★ 4.5k • written 6 months ago by • 0
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1.8k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
10 months ago Linton • 0
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822
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
11 months ago Sabiha ▴ 20
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2
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672
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
12 months ago Manthos • 0
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 12 months ago by 51k • written 12 months ago by ▴ 10
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874
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 17 months ago by 51k • written 17 months ago by ▴ 10
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3
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2.6k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 20 months ago by ★ 4.5k • written 20 months ago by ▴ 10
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4
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947
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
21 months ago Loïc • 0
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
21 months ago rcreswell01 • 0
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1.2k
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 21 months ago by 51k • written 22 months ago by ▴ 10
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 24 months ago by 42k • written 2.1 years ago by ▴ 10
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790
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.1 years ago Laurent Gatto 1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.1 years ago walkerrh95 • 0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.2 years ago gaow • 0
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681
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.7 years ago dong ▴ 10
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3
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4.4k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.6 years ago by • 0 • written 2.8 years ago by • 0
6
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4
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1.2k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.8 years ago Giovanni • 0
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7
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1.7k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.2 years ago Field -Ye • 0
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1.7k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.4 years ago Aneesha • 0
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888
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.5 years ago by 42k • written 3.5 years ago by • 0
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6
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1.9k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.7 years ago by 51k • written 3.7 years ago by ▴ 10
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3
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1.3k
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 3.8 years ago by 42k • written 3.8 years ago by • 0
0
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0
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1.4k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.9 years ago jol.espinoz ▴ 40
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2
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857
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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