Showing : StatisticalMethod • reset
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
7 days ago user_bioinfo • 0
1
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2
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294
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 4 months ago by • 0
0
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1
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455
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 9 months ago by ★ 1.4k • written 10 months ago by • 0
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373
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
10 months ago pierre.devillemereuil • 0
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3
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1.1k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 11 months ago by ★ 4.8k • written 11 months ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
15 months ago Linton • 0
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2
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991
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
15 months ago Sabiha ▴ 20
2
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2
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832
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
16 months ago Manthos • 0
5
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2
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1.7k
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 17 months ago by 52k • written 17 months ago by ▴ 10
3
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2
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976
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 21 months ago by 52k • written 21 months ago by ▴ 30
2
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3
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3.2k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.0 years ago by ★ 4.8k • written 2.0 years ago by ▴ 10
2
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4
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1.0k
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.1 years ago Loïc • 0
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2
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1.2k
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.1 years ago rcreswell01 • 0
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3
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1.4k
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.2 years ago by 52k • written 2.2 years ago by ▴ 10
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722
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.3 years ago by 43k • written 2.4 years ago by ▴ 10
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847
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.4 years ago Laurent Gatto 1.6k
1
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2
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1.4k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.5 years ago walkerrh95 • 0
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1.2k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.6 years ago gaow • 0
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0
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744
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.0 years ago dong ▴ 10
2
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3
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5.4k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.9 years ago by • 0 • written 3.2 years ago by • 0
6
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4
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1.3k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.2 years ago Giovanni • 0
2
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7
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1.9k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.5 years ago Field -Ye • 0
0
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2
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1.9k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.8 years ago Aneesha • 0
0
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1
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997
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
6
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6
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2.1k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.0 years ago by 52k • written 4.1 years ago by ▴ 10
1
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3
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1.4k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.2 years ago jol.espinoz ▴ 40
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2
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920
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
28 results • Page 1 of 1
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Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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