Showing : StatisticalMethod • reset
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 3 months ago by ★ 1.4k • written 3 months ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
4 months ago pierre.devillemereuil • 0
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3
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 4 months ago by ★ 4.4k • written 4 months ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
8 months ago Linton • 0
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
9 months ago Sabiha ▴ 20
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
10 months ago Manthos • 0
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 11 months ago by 51k • written 11 months ago by ▴ 10
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 15 months ago by 51k • written 15 months ago by ▴ 10
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 18 months ago by ★ 4.4k • written 18 months ago by • 0
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902
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
19 months ago Loïc • 0
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
19 months ago rcreswell01 • 0
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 20 months ago by 51k • written 20 months ago by ▴ 10
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 22 months ago by 42k • written 23 months ago by ▴ 10
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756
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
23 months ago Laurent Gatto 1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
24 months ago walkerrh95 • 0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.0 years ago gaow • 0
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649
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.5 years ago dong ▴ 10
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3
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4.1k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.4 years ago by • 0 • written 2.7 years ago by • 0
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4
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1.2k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.7 years ago Giovanni • 0
2
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7
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1.7k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.0 years ago Field -Ye • 0
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1.6k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.3 years ago Aneesha • 0
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855
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.4 years ago by 42k • written 3.4 years ago by • 0
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6
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1.9k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.5 years ago by 51k • written 3.6 years ago by ▴ 10
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3
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1.3k
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 3.6 years ago by 42k • written 3.6 years ago by • 0
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1.4k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.7 years ago jol.espinoz ▴ 40
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2
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820
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p adjusted value not available
StatisticalMethod DESeq2
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by • 0
26 results • Page 1 of 1
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Comment: How should I run ssGSEA Hallmark Enrichment Analysis? by Ginny • 0
I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…
Comment: ISO a solution to rank-order introns by transcript by James W. MacDonald 67k
There's an error in the last line. Note that `sapply(lengths(z), seq_len)` will return a `list` because the lengths vary. We need a vector,…
Comment: BiomaRt - improved access to Ensembl ? by Mike Smith ★ 6.5k
Why do you want to use `useMart()` rather than `useEnsembl()`? They are essentially the same (`useEnsembl()` will eventually call `useMart(…
Comment: Installing Bioconductor packages in Docker by devarti.mahakalkar • 0
I have installed BiocManager on my base image rather than having it as base image. RUN Rscript -e "install.packages('BiocManager', re…
Comment: Meta-analysis on RNA-seq data sets by Travis • 0
Thank you for your suggestions and explanation of your approach!
Votes
Answer: ISO a solution to rank-order introns by transcript
Answer: ISO a solution to rank-order introns by transcript
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: addPatternDensity in 'qsea' takes too much time
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