Bioconductor SmallRNA

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DESeq2 SmallRNA

updated 9 months ago by Michael Love 43k • written 10 months ago by r.r.bioinf • 0

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850

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SmallRNA DESeq2

2.4 years ago jucosie • 0

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1.2k

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counts SmallRNA Normalization

updated 3.0 years ago by hauken_heyken ▴ 80 • written 3.1 years ago by k___ ▴ 30

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matrix DESeq2 SmallRNA dimensions small

3.3 years ago andreia ▴ 10

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TMM deseq2 smallrna rnaseq

updated 6.1 years ago by António Miguel de Jesus Domingues ▴ 510 • written 6.1 years ago by Konstantinos Yeles ▴ 80

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1.3k

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cancer sequencing rnaseq methylation smallrna Job

6.5 years ago Andy Lynch ▴ 120

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mirna riboseq smallrna differential gene expression Job

6.8 years ago Andy Lynch ▴ 120

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deseq2 normalization smallrna ribosomal rna

8.2 years ago mosharrofgeb ▴ 10

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smallrna counts

8.2 years ago ribioinfo ▴ 100

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Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma

updated 10.4 years ago by James W. MacDonald 67k • written 10.4 years ago by Jakub Stanislaw Nowak ▴ 70

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Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR

updated 12.3 years ago by Steve Lianoglou ★ 13k • written 12.3 years ago by Weng Khong LIM ▴ 10

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Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR

updated 12.3 years ago by Mark Robinson ▴ 880 • written 12.3 years ago by Danie ▴ 40

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Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq

updated 14.0 years ago by Wolfgang Huber ★ 13k • written 14.0 years ago by Wu, Xiwei ▴ 350

13 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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