Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SingleCellData
•
reset
0
votes
2
replies
509
views
Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
10 weeks ago • updated 9 weeks ago
José
• 0
0
votes
1
reply
447
views
Is CEMiTool for gene coexpression analysis suitable for single cell RNA Seq data?
SingleCellData
CEMiTool
updated 4 months ago by
James W. MacDonald
67k • written 4 months ago by
Menna
• 0
0
votes
1
reply
476
views
Dimensionality reduction visualization
imcRtools
SingleCellData
imcdatasets
SpatialWorkflow
updated 11 months ago by
James W. MacDonald
67k • written 11 months ago by
Simon
• 0
0
votes
7
replies
2.0k
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse
R
SingleCellExperiment
SingleCellData
written 13 months ago by
Sitapriya
• 0
0
votes
2
replies
656
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 13 months ago by
ATpoint
★ 4.6k • written 13 months ago by
yw24418
• 0
0
votes
3
replies
1.0k
views
insufficient unique points for computing knee/inflection points
DropletUtils
SingleCellData
updated 17 months ago by
ATpoint
★ 4.6k • written 17 months ago by
p.vlachou-efstathiou
• 0
0
votes
2
replies
1.5k
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR
SingleCellExperiment
SingleCellData
18 months ago
Matvii Mykhailichenko
• 0
1
vote
0
replies
901
views
Job:
Research Assistant - Computational Biology/Immunology, Memorial Sloan Kettering, New York
SingleCellData
ComputationalBiology
21 months ago
Chrysothemis
▴ 10
0
votes
0
replies
955
views
Job:
Job as a bioinformatician in Hamburg, Germany
DimensionReduction
SingleCellData
multiomics
MachineLearning
2.1 years ago
Diego's
• 0
0
votes
0
replies
700
views
Gene Id duplicated
SingleCell
SingleCellData
updated 2.2 years ago by
ATpoint
★ 4.6k • written 2.3 years ago by
Romina
• 0
2
votes
2
replies
1.0k
views
How to detect LacZ tagged cells from single cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
2.3 years ago
k1m
▴ 20
2
votes
4
replies
1.2k
views
Summary of library size factor is all equal to one
SingleCell
SingleCellData
SingleCellWorkflow
SingleCellExperiment
2.3 years ago
Romina
• 0
0
votes
1
reply
1.2k
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 2.7 years ago by
luke.zappia
▴ 50 • written 2.7 years ago by
Fatima
• 0
0
votes
1
reply
996
views
Running PLAGE gets killed
GSVA
SingleCellData
updated 2.8 years ago by
Robert Castelo
★ 3.4k • written 2.8 years ago by
Amna
• 0
2
votes
1
reply
2.1k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.9 years ago by
James W. MacDonald
67k • written 2.9 years ago by
NGS_enthusiast
• 0
1
vote
3
replies
2.2k
views
10X FeatureBarcode producing too many "cells"
SingleCellExperiment
DropletUtils
SingleCellData
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
msn
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
Awards
• All
Popular Question
to
shepherl
4.1k
Popular Question
to
Gordon Smyth
52k
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
Hervé Pagès
16k
Teacher
to
dsull
▴ 40
Locations
• All
Sweden,
3 minutes ago
India,
19 minutes ago
United States,
1 hour ago
Sweden,
4 hours ago
UPF, Barcelona, Spain,
4 hours ago
Traffic: 649 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6