Bioconductor SingleCellData

Showing : SingleCellData • reset

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591

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fastMNN SingleCellData BatchEffect batchelor

3 months ago José • 0

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463

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SingleCellData CEMiTool

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by Menna • 0

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496

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imcRtools SingleCellData imcdatasets SpatialWorkflow

updated 12 months ago by James W. MacDonald 67k • written 12 months ago by Simon • 0

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tidyverse R SingleCellExperiment SingleCellData

written 14 months ago by Sitapriya • 0

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683

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AnnotationHubSoftware SingleCellData annotationTools

updated 14 months ago by ATpoint ★ 4.6k • written 14 months ago by yw24418 • 0

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1.1k

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DropletUtils SingleCellData

updated 18 months ago by ATpoint ★ 4.6k • written 18 months ago by p.vlachou-efstathiou • 0

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1.6k

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singleR SingleCellExperiment SingleCellData

19 months ago Matvii Mykhailichenko • 0

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925

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SingleCellData ComputationalBiology

22 months ago Chrysothemis ▴ 10

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975

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DimensionReduction SingleCellData multiomics MachineLearning

2.1 years ago Diego's • 0

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717

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SingleCell SingleCellData

updated 2.3 years ago by ATpoint ★ 4.6k • written 2.3 years ago by Romina • 0

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1.1k

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

2.4 years ago k1m ▴ 20

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1.2k

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

2.4 years ago Romina • 0

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1.2k

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SingleCellData splatter

updated 2.7 years ago by luke.zappia ▴ 50 • written 2.8 years ago by Fatima • 0

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GSVA SingleCellData

updated 2.9 years ago by Robert Castelo ★ 3.4k • written 2.9 years ago by Amna • 0

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biobase SingleCellData seurat SingleCell

updated 3.0 years ago by James W. MacDonald 67k • written 3.0 years ago by NGS_enthusiast • 0

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2.2k

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SingleCellExperiment DropletUtils SingleCellData

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by msn ▴ 10

16 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0