Bioconductor Seqnames

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Seqnames makeGRangesFromDataFrame GRanges Subsetting GenomicRanges

3.6 years ago rtrivedi1 ▴ 10

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973

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dnastringset dnastringsetlist seqnames

6.2 years ago s.ghignone ▴ 10

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1.2k

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seqnames genomeinfodb

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by matt.chambers42 ▴ 10

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genomicranges seqnames factor

8.3 years ago wcstcyx ▴ 30

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1.0k

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software error seqnames characters r chipseq

8.7 years ago awakumaya • 0

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18k

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granges genomicranges sort seqnames order

updated 9.8 years ago by yinghua ▴ 30 • written 10.2 years ago by enricoferrero ▴ 660

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6.8k

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GRanges seqnames seqlengths IRanges

10.3 years ago topher.hamm • 0

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

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