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Seqnames
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reset
0
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5
replies
3.5k
views
Grange object subsetting using seqnames
Seqnames
makeGRangesFromDataFrame
GRanges
Subsetting
GenomicRanges
3.4 years ago
rtrivedi1
▴ 10
2
votes
1
reply
936
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
6.0 years ago
s.ghignone
▴ 10
0
votes
1
reply
1.1k
views
GenomeInfoDb: where are the genome patches?
seqnames
genomeinfodb
updated 7.5 years ago by
Hervé Pagès
16k • written 7.5 years ago by
matt.chambers42
▴ 10
0
votes
2
replies
2.0k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
8.1 years ago
wcstcyx
▴ 30
0
votes
1
reply
982
views
error in noGGi
software error
seqnames
characters
r
chipseq
8.5 years ago
awakumaya
• 0
17
votes
4
replies
17k
views
How to properly sort GRanges?
granges
genomicranges
sort
seqnames
order
updated 9.6 years ago by
yinghua
▴ 30 • written 10.0 years ago by
enricoferrero
▴ 660
0
votes
6
replies
6.6k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges
seqnames
seqlengths
IRanges
10.1 years ago
topher.hamm
• 0
7 results • Page
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Answer: Is my time course analysis with DESeq2 valid?
by
Michael Love
42k
For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
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