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Segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
22 months ago
raven1306
• 0
0
votes
1
reply
836
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 4.5 years ago by
markus.riester
▴ 130 • written 4.5 years ago by
sruddy17
• 0
0
votes
0
replies
843
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.4 years ago
jlarsen728
• 0
1
vote
5
replies
1.3k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.9 years ago
Jenny.chien
• 0
0
votes
3
replies
1.6k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.0 years ago by
markus.riester
▴ 130 • written 7.0 years ago by
Luisa672
• 0
1
vote
2
replies
1.4k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 7.4 years ago by
Venkat Seshan
▴ 30 • written 7.4 years ago by
W. C.
▴ 10
0
votes
2
replies
1.2k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 8.2 years ago by
James W. MacDonald
66k • written 8.2 years ago by
kazi
• 0
7 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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