Bioconductor Segmentation

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688

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BAM Segmentation CINdex VCF Data

2.4 years ago raven1306 • 0

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995

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PureCN CNV CNA segmentation calculateTangentNormal

updated 5.1 years ago by markus.riester ▴ 130 • written 5.1 years ago by sruddy17 • 0

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969

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segmentation reference CNA TCGA

6.0 years ago jlarsen728 • 0

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classification segmentation cell types image analysis crimage

6.5 years ago Jenny.chien • 0

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1.8k

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TCGA Cancer dnacopy segmentation

updated 7.6 years ago by markus.riester ▴ 130 • written 7.6 years ago by Luisa672 • 0

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dnacopy segmentation CBS

updated 8.0 years ago by Venkat Seshan ▴ 30 • written 8.0 years ago by W. C. ▴ 10

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1.4k

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gcrma segmentation fault segfault

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by kazi • 0

7 results • Page 1 of 1

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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k

I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…

Comment: Csaw normalization strategies - general inquiry by Luca • 0

Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10

Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …

Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Votes

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

Awards • All

Scholar to Aaron Lun ★ 28k