Bioconductor Segmentation

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667

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BAM Segmentation CINdex VCF Data

2.3 years ago raven1306 • 0

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975

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PureCN CNV CNA segmentation calculateTangentNormal

updated 5.0 years ago by markus.riester ▴ 130 • written 5.0 years ago by sruddy17 • 0

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951

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segmentation reference CNA TCGA

5.9 years ago jlarsen728 • 0

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classification segmentation cell types image analysis crimage

6.4 years ago Jenny.chien • 0

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1.8k

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TCGA Cancer dnacopy segmentation

updated 7.5 years ago by markus.riester ▴ 130 • written 7.5 years ago by Luisa672 • 0

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1.5k

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dnacopy segmentation CBS

updated 7.9 years ago by Venkat Seshan ▴ 30 • written 7.9 years ago by W. C. ▴ 10

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1.4k

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gcrma segmentation fault segfault

updated 8.7 years ago by James W. MacDonald 67k • written 8.7 years ago by kazi • 0

7 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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