Bioconductor SVAseq

Showing : SVAseq • reset

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619

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DESeq2 Normalisation Bulkrnaseq Svaseq

9 months ago BioinfGuru ▴ 70

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906

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RUVSeq svaseq

2.7 years ago Tongjun • 0

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1.4k

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RNASeq sva svaseq

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Bex • 0

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1.1k

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limma sva Leafcutter SVAseq

3.4 years ago georgia.katsoula ▴ 40

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1.0k

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sva svaseq surrogate variable analysis

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by Mozart ▴ 30

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1.1k

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svaseq sva

6.0 years ago flippy23 • 0

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1.1k

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MEDIPS svaseq sva

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by tofukaj • 0

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2.0k

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deseq2 svaseq

6.1 years ago bioinfo • 0

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1.9k

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edger sva svaseq limma

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by cats_dogs ▴ 20

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3.8k

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DESeq2 sva svaseq batch effect correction

7.1 years ago L_K • 0

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1.3k

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svaseq batcheffectcorrection

7.3 years ago burcu.atasu • 0

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1.8k

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ruvseq svaseq edaseq

updated 7.3 years ago by davide risso ▴ 980 • written 7.3 years ago by llo ▴ 10

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1.5k

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sva svaseq batch effect batch effects batch effect correction

7.6 years ago vedran.franke • 0

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2.0k

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deseq2 svaseq

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by gpalidwor ▴ 10

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2.1k

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sva svaseq

updated 7.7 years ago by Guido Hooiveld ★ 4.1k • written 7.7 years ago by wamiqsaifi • 0

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2.8k

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limma sva svaseq

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by Bogdan ▴ 670

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2.1k

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svaseq dexseq

updated 8.1 years ago by Alejandro Reyes ★ 1.9k • written 8.1 years ago by tofukaj • 0

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3.0k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 8.4 years ago by Jakub ▴ 50 • written 8.4 years ago by amoltej ▴ 10

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6.0k

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deseq2 svaseq

8.4 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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2.1k

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deseq2 sva svaseq

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by szenitha ▴ 20

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2.9k

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sva svaseq batcheffectcorrection

updated 8.6 years ago by Jeff Leek ▴ 650 • written 8.6 years ago by szenitha ▴ 20

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4.1k

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deseq2 sva svaseq pca

8.7 years ago Peter Alto ▴ 20

22 results • Page 1 of 1

Recent ...

Replies

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Comment: Limma with covariates by Hoover • 0

Thanks for the suggestion James ([geometry dash meltdown][1]) [1]: https://geometry-dashmeltdown.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760