Showing : SVAseq • reset
2
votes
2
replies
488
views
Double normalising when using sva and deseq2
DESeq2 Normalisation Bulkrnaseq Svaseq
6 months ago BioinfGuru ▴ 70
0
votes
1
reply
852
views
how to identify the unwanted variables independent of phenotypes
RUVSeq svaseq
2.5 years ago Tongjun • 0
0
votes
0
replies
1.3k
views
SVA method for estimating surrogate variables of RNA Seq
RNASeq sva svaseq
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
votes
0
replies
982
views
SVAseq for differential transcript usage and differential splicing analysis
limma sva Leafcutter SVAseq
3.2 years ago georgia.katsoula ▴ 40
0
votes
1
reply
958
views
SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.7 years ago by 67k • written 4.7 years ago by ▴ 30
1
vote
1
reply
1.1k
views
svaseq - over adjustment
svaseq sva
5.8 years ago flippy23 • 0
1
vote
1
reply
1.0k
views
sva correction for MEDIPS
MEDIPS svaseq sva
updated 5.9 years ago by ▴ 570 • written 5.9 years ago by • 0
2
votes
3
replies
1.9k
views
Batch-effect: batch in design and corrected batch with sva- DESeq2
deseq2 svaseq
5.9 years ago bioinfo • 0
3
votes
4
replies
1.8k
views
Calling svaseq() multiple times
edger sva svaseq limma
updated 6.6 years ago by ★ 7.9k • written 6.6 years ago by ▴ 20
1
vote
2
replies
3.6k
views
Applying SVA to RNA-Seq dataset
DESeq2 sva svaseq batch effect correction
6.9 years ago L_K • 0
0
votes
0
replies
1.3k
views
correlated known batch effect correction using svaseq
svaseq batcheffectcorrection
7.1 years ago burcu.atasu • 0
1
vote
1
reply
1.7k
views
Outputting batch-effect free normalized counts
ruvseq svaseq edaseq
updated 7.1 years ago by ▴ 980 • written 7.1 years ago by ▴ 10
0
votes
0
replies
1.4k
views
Batch correction with uncertain biological variables
sva svaseq batch effect batch effects batch effect correction
7.4 years ago vedran.franke • 0
1
vote
6
replies
1.9k
views
RNASeq fold change analysis after subtraction of contaminating MEF signal
deseq2 svaseq
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Taking surrogate variable into account before running PCA
sva svaseq
updated 7.5 years ago by ★ 4.1k • written 7.5 years ago by • 0
3
votes
2
replies
2.7k
views
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
limma sva svaseq
updated 7.8 years ago by ★ 28k • written 7.8 years ago by ▴ 670
2
votes
7
replies
2.0k
views
Is possible to apply 'svaseq' with 'DEXSeq' design in order to remove unknown batch effects ?
svaseq dexseq
updated 7.9 years ago by ★ 1.9k • written 7.9 years ago by • 0
3
votes
6
replies
2.8k
views
is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 8.2 years ago by ▴ 50 • written 8.2 years ago by ▴ 10
5
votes
7
replies
5.8k
views
Correcting for known and surrogate variables in DESeq2
deseq2 svaseq
8.2 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190
2
votes
1
reply
2.0k
views
Regarding batch effect in Deseq2 package
deseq2 sva svaseq
updated 8.3 years ago by 43k • written 8.3 years ago by ▴ 20
0
votes
3
replies
2.8k
views
can we use sva function to estimate artifacts for rna seq data?
sva svaseq batcheffectcorrection
updated 8.4 years ago by ▴ 650 • written 8.4 years ago by ▴ 20
1
vote
5
replies
4.0k
views
PCA of svaseq "cleaned" counts and DESeq2 SV subtracted counts are different?
deseq2 sva svaseq pca
8.5 years ago Peter Alto ▴ 10
22 results • Page 1 of 1
Recent ...
Replies
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0
Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…
Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0
EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
Awards • All
Teacher to dsull ▴ 40
Popular Question to bpshtiwan ▴ 10
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Locations • All
Canada, 15 minutes ago
Vietnam, 1 hour ago
United States, 2 hours ago
Japan, 2 hours ago
UPF, Barcelona, Spain, 6 hours ago
Traffic: 435 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6