Bioconductor STRINGTIE

Showing : STRINGTIE • reset

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716

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by sumitra.20 • 0

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936

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DESeq2 TPM rawcounts StringTie

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by snijesh ▴ 200

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1.7k

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isoform RNA-seq hisat2 stringtie ballgown

4.4 years ago ra711 • 0

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1.9k

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ballgown StringTie galaxy rnaseq

updated 2.7 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by lakshmi9c • 0

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3.9k

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deseq2 StringTie RNA-seq normalisation

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by JindrichK • 0

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2.3k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 6.1 years ago by Wei Shi ★ 3.6k • written 6.1 years ago by IRAIA.MAIALEN • 0

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1.6k

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tximport stringtie RNA-seq analysis

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by Mithil Gaikwad • 0

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5.1k

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prepDE STRINGTIE deseq2

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by Nancy ▴ 10

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1.9k

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tximport stringtie

7.0 years ago • updated 6.8 years ago matrs ▴ 10

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2.2k

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hisat2 stringtie ballgown RNAseq

7.1 years ago • updated 6.8 years ago Nancy ▴ 10

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1.6k

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Ballgown Stringtie DEG rnaseq

6.8 years ago vharshavardhanan • 0

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3.0k

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ballgown biologicalreplicates technical replicates stringtie

updated 7.3 years ago by Alyssa Frazee ▴ 210 • written 8.0 years ago by linda.boshans • 0

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1.7k

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stringtie illumina hisat2 ballgown

updated 7.3 years ago by k.vitting.seerup ▴ 120 • written 7.3 years ago by amy16 • 0

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6.3k

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ballgown stringtie

updated 8.0 years ago by linda.boshans • 0 • written 9.0 years ago by bhawley1991 ▴ 10

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1.6k

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ballgown stringtie voom limma differential gene expression rnaseq

updated 8.5 years ago by Alyssa Frazee ▴ 210 • written 8.5 years ago by jcalis ▴ 10

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2.1k

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ballgown stringtie

updated 8.6 years ago by Jeff Leek ▴ 650 • written 8.6 years ago by alva.james • 0

16 results • Page 1 of 1

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Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Comment: Limma with covariates by Hoover • 0

Thanks for the suggestion James ([geometry dash meltdown][1]) [1]: https://geometry-dashmeltdown.co

Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy by Erik Wright ▴ 150

IDTAXA classification can be performed from training sets with or without assigned ranks. In this case it looks like `LearnTaxa()` was not …

Comment: Understanding "gene ratio" when using plotEnrich(c()) by California Business Journal • 0

Find the latest [California business articles][1] on California Business Journal, covering success stories, market trends, and expert insig…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760