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STATISTICS
•
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0
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0
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257
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
4 months ago
Andy Lynch
▴ 120
0
votes
0
replies
297
views
multipollutant models
statistics
Regression
r
limma
7 months ago
Jitendra
▴ 10
0
votes
1
reply
373
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 7 months ago by
Michael Love
42k • written 7 months ago by
lionel.spinelli
• 0
1
vote
1
reply
416
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 9 months ago by
James W. MacDonald
66k • written 9 months ago by
Jitendra
▴ 10
1
vote
1
reply
1.6k
views
FPKM t-test vs DEseq2
DESeq2
statistics
rna-seq
updated 14 months ago by
ATpoint
★ 4.2k • written 14 months ago by
SH
• 0
0
votes
3
replies
1.1k
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 16 months ago by
Lluís Revilla Sancho
▴ 730 • written 16 months ago by
Jitendra
▴ 10
0
votes
0
replies
716
views
Job:
PhD position in Bioinformatics in Jena
Statistics
ComputationalBiology
Aging
MachineLearning
18 months ago
alena.vanboemmel
• 0
0
votes
2
replies
760
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize
statistics
DESeq2
updated 19 months ago by
swbarnes2
★ 1.4k • written 19 months ago by
N
• 0
1
vote
0
replies
696
views
Statistical test for genomic annotation by ChIPseeker
statistics
PeakAnnotation
ChIPseeker
GuangchuangYu
23 months ago
arisarkar88
▴ 40
1
vote
0
replies
819
views
Job:
Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational
teaching
statistics
research
23 months ago
Andy Lynch
▴ 120
1
vote
0
replies
817
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
23 months ago
Andy Lynch
▴ 120
0
votes
6
replies
1.4k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
2.1 years ago
Jitendra
▴ 10
0
votes
3
replies
1.6k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.4 years ago by
Sean Davis
21k • written 2.5 years ago by
Jitendra
▴ 10
3
votes
5
replies
1.4k
views
P adjusted values in Deseq2
DESeq2
Statistics
written 3.5 years ago by
Jesus
• 0
0
votes
2
replies
1.1k
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
2.7 years ago • updated 17 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
959
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq
pathview
statistics
R
3.3 years ago • updated 3.2 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
982
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
3.3 years ago
m.jackson
• 0
0
votes
0
replies
950
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
3.5 years ago
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
1.1k
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
3.5 years ago
Laura
• 0
0
votes
0
replies
957
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R
statistics
pathview
singlecellRNA-Seq
3.6 years ago • updated 3.3 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
1.2k
views
Re-calculation of Padj (P adjusted value)
statistics
Benjamini–Hochberg procedure
deseq2
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
Matan G.
▴ 60
2
votes
0
replies
896
views
Job:
Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology
statistics
bioinformatics
Job
3.8 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
806
views
Job:
Two Bioinformatics Fellowship Positions at US EPA
bioinformatics
toxicology
Job
sequenicng
statistics
3.9 years ago • updated 3.7 years ago
whduke
• 0
0
votes
0
replies
1.9k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
6.0 years ago • updated 3.6 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
954
views
Job:
Post-Doctoral Research Fellow, Cancer Genomics
genomics
seattle
bioinformatics
data science
statistics
Job
4.1 years ago
Fred Hutch (Recruiting)
▴ 40
3
votes
0
replies
2.3k
views
Job:
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job
proteomics
Job
statistics
4.7 years ago • updated 4.5 years ago
Gordon Smyth
51k
0
votes
0
replies
1.4k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
NGS
R
statistics
genomics
big data
Job
5.4 years ago • updated 4.6 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
839
views
How to handle batch effect and interaction with experimental variables
deseq2
statistics
differential expression
4.6 years ago
A
• 0
0
votes
1
reply
799
views
Exclude interaction terms from the design
deseq2
statistics
modelling
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
polyptwo
• 0
2
votes
2
replies
3.1k
views
How adjusted p-values are calculated in limma
limma
r
transcriptomics
FDR
statistics
updated 4.8 years ago by
Gordon Smyth
51k • written 4.8 years ago by
Wuschel
▴ 10
0
votes
0
replies
1.0k
views
Proteomics data analysis with DEP no replicates
DEP
Proteomics
Statistics
limma
4.9 years ago
tatabox
• 0
3
votes
3
replies
1.5k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2
apeglm
statistics
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
zefrieira
• 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.4 years ago
naglemi
▴ 10
0
votes
0
replies
807
views
package for mismatch distribution?
genetics
statistics
5.5 years ago
myriam.croze07
• 0
1
vote
6
replies
2.9k
views
DESeq2 unbalanced sample size
deseq2
bioconductor
bioinformatics
statistics
updated 16 months ago by
Michael Love
42k • written 5.5 years ago by
casikecola
• 0
1
vote
2
replies
968
views
Newbie to all of this
bioconductor
statistics
5.7 years ago
sportwoo
• 0
8
votes
8
replies
7.0k
views
Voom transformation from counts and normalization to negative values
rnaseq
voom
limma
tcga
statistics
updated 5.8 years ago by
Ryan C. Thompson
★ 7.9k • written 5.8 years ago by
Beginner
▴ 60
1
vote
2
replies
1.0k
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays
microarray
probe
statistics
updated 5.9 years ago by
James W. MacDonald
66k • written 5.9 years ago by
ravelarvargas
• 0
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
5.9 years ago
Andrea Carenzo
• 0
0
votes
2
replies
1.2k
views
comparing two GOstats result lists
gostats
statistics
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
sven.schenk
▴ 20
1
vote
0
replies
1.2k
views
Job:
Statistical Research Associate
biostatistics
statistics
sas
git
assay
Job
6.2 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.2 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.2k
views
News:
SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell
cancer genomics
statistics
News
6.3 years ago
kieranrcampbell
▴ 50
0
votes
0
replies
1.2k
views
Two questions about pathifier package
pathways
statistics
microarray
6.5 years ago
arronar
• 0
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 9 months ago by
camillab.
▴ 10 • written 6.7 years ago by
Russ Fraser
▴ 30
2
votes
4
replies
1.3k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 6.8 years ago by
Steve Lianoglou
★ 13k • written 6.8 years ago by
David R
▴ 90
0
votes
0
replies
1.2k
views
Assigning stats to differential peak locations relative to TSS
chipseeker
chipseq
statistics
6.8 years ago
rbronste
▴ 60
0
votes
0
replies
1.6k
views
Job:
Research Scientist in Biostatistics/Bioinformatics
statistics
genetics
genomics
R
Job
7.4 years ago • updated 7.2 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
2.1k
views
how to perform pre ranked GSEA in R?
r
microarray
statistics
GSEA
updated 7.3 years ago by
predeus
• 0 • written 9.3 years ago by
Nemo
▴ 80
0
votes
0
replies
1.3k
views
Job:
Bioinformaticist, Research Programmer
R
genomics
statistics
Job
7.4 years ago
radel
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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