Bioconductor RoadMap Project

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roadmap project annotationhub

7.7 years ago vanesa_1230 • 0

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.7 years ago by vanesa_1230 • 0 • written 9.7 years ago by Sonali Arora ▴ 390

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annotationhub roadmap project rpkm data.frame

8.3 years ago • updated 8.2 years ago wcstcyx ▴ 30

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roadmap project annotationhub epigenomics big data

updated 8.7 years ago by Valerie Obenchain ★ 6.8k • written 8.7 years ago by kevin.rue ▴ 350

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: Error in download.file for TCGAutils::symbolsToRanges

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