Bioconductor RoadMap Project

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roadmap project annotationhub

7.8 years ago vanesa_1230 • 0

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.8 years ago by vanesa_1230 • 0 • written 9.7 years ago by Sonali Arora ▴ 390

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annotationhub roadmap project rpkm data.frame

8.3 years ago wcstcyx ▴ 30

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roadmap project annotationhub epigenomics big data

updated 8.8 years ago by Valerie Obenchain ★ 6.8k • written 8.8 years ago by kevin.rue ▴ 350

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Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.0k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Votes

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

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