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RUV
•
reset
0
votes
1
reply
549
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 6 months ago by
Michael Love
43k • written 6 months ago by
Ειρήνη
• 0
1
vote
2
replies
1.8k
views
RUV4 for microarrays
RUV4
RUV
Microarray
3.7 years ago
Antonio
• 0
5
votes
6
replies
2.0k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 4.3 years ago by
James W. MacDonald
67k • written 4.3 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.9k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.7 years ago by
hermidalc
▴ 20 • written 5.5 years ago by
raf4
▴ 30
0
votes
3
replies
1.3k
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.9 years ago by
tmms
• 0 • written 4.9 years ago by
f_pardow
• 0
0
votes
1
reply
1.4k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
r.tom
• 0
0
votes
0
replies
1.1k
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
6.4 years ago
peter.fransquet
• 0
0
votes
0
replies
1.1k
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.7 years ago
RC
• 0
0
votes
0
replies
1.1k
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.7 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
3.0k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.5 years ago by
davide risso
▴ 980 • written 7.5 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
2.7k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.5 years ago
Nik Tuzov
▴ 90
0
votes
0
replies
1.1k
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
7.6 years ago
manish20072013
• 0
3
votes
4
replies
3.5k
views
Single cells batch effects
RUV
single cell
batch effect
7.8 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.2k
views
Has anyone used the RUV package for Microbiome data?
ruv
7.9 years ago
sasha
• 0
0
votes
1
reply
2.6k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 8.0 years ago by
davide risso
▴ 980 • written 8.1 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.2k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
8.1 years ago
carleshf
▴ 10
2
votes
1
reply
1.8k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.5 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.6k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
9.5 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.8k
views
normalised data after RUV2( )
ruv
microarray
updated 9.5 years ago by
gthm
▴ 30 • written 9.7 years ago by
Pauly Lin
▴ 160
3
votes
2
replies
2.9k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 9.7 years ago by
davide risso
▴ 980 • written 9.7 years ago by
Pauly Lin
▴ 160
1
vote
9
replies
3.1k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.7 years ago
sergio.espeso-gil
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: How to sort negative log2FC or FC in RNAseq for GSEA?
by
QN
▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs
by
ATpoint
★ 4.6k
"Joseph" is a spam bot...
Comment: Problems with oarfish + tximport + swish
by
Im
• 0
Office ta kemon
Answer: How to sort negative log2FC or FC in RNAseq for GSEA?
by
ATpoint
★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs
by
James
• 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Comment: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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